Non-Coding RNA Search

Ss1.1-rhyp31c_h21.5

Sequence:


               
               CGAGTTACTAACAGGATAAGAAGGGGGCAGATCTTTGGCTTCTCCTTGGTTATGTCGCAA
CTTCAGGATTGGGTGAGGCAGATAAATGAAACCCGCTCCAGGGTCACTGTTCTGACCTAA
GCTCTTAACCGAGAGCCAGCTGGACATTCTTCCCCAAATTGCCGGATTGAAATCTTGCTG
GTTTTACTGAGTAATGCCAGACTGACTGCTACCAGGCGTGCCTGGATGGCTTTGCGCCTG
GGGTCGAACCCACTTGAGCAGCAAGCTGCTCAGGATTGGGCGCAGGGAATCCCTTCGTCT
GGTTCTAAAACTCGGTGTTCCAAATGTCTCTTACAAGAAATGGAAACAAGGCTGAGGATA
CATGCCTCTGACATCAGACTGTGTTCTGCTCCTTGTCTGGCGGGCGTTAGGGTGTGCAGA
GAGCGGGCGAGCACCATCCACTGTCTGCACTTGGCGGGCTCATGGGGCAGGGCTGCTCTT
CCCAAGCCCCACGTTCCTTCATGCTCTTCTCTCCTTGTTCGTTCTGGAGTTCGTTGCTTT
GTGGGAACTAAGACCTAGAGACATTTGGAGAATTTGGCAAGTATTTGCTTGATCTCGAGC
CTGTGGAGATGGTATCGGGACCAGTCTGGTAACTACGTGGAGGGTCCTGTGCATCCCCTT
TGCTCCATGGTCTTGGCACAGACCCTGGCCTCCTTCCTCGGGATCCCCTCTGTCCTGTCC
CACCCTCTGGGCCCTGGGCTTCTCTCTTGGCATCTGAACTGTAGCCTCCCTGAGGCAGAG
TAGCGACAGACCACAACCAGAGGGGCTTATTGTTTTCCTGGCTAGAAAAGCTGGCCACCA
GTGGGGAAGCAGCGTGGGGCTGGCTGGACCCTGGTCCTCCACCCATCTTTCCTAGGTGGA
GCTTTCATCACAGAACAGTGCTGTCTCCATCTGGCCACGGATGCTAACTGAACCTTGGCC
ATGGCTCAGGCCTGTACAGGCTAGCTTTATCCTCACCACTGATTTGGCCAAGGTTGTGCA
CTTCCTAGTATCTTGCCCTACCCTGTCTCCACGCCTGGATGGGACCTCCTGCTTACTTTG
GACCTCATGTGCTTTGAAGAAGCTTTGAGAGCCAGTGTGGTGTCTTCCATGGGTCTCCTC
TCCCTGCAGCAAGAAACTAGCCTCATGGGTCCCCTTGAGCCAAATATCATCTGGGCAAGT
CCTGGTTCCTCGAGGTGGTCTCTGTTGCCAGTTAAAACTCCTTAGTAGGTCTCTGTGCCT
CAGTGGCCTCAAAGCAGAGGGTCCAGAGGGTCTCTGCTGTCAACTGCTCAGCCTTGCTCG
AGCTCCAGCCACTTGTGATAACCAACCTTGTTCCCTTACCAATTCCAGCATGTGACTTTG
GTGCCCTGTTGTTACTCGTGAAAAACCTCTTCTTCTGTTGTCTTTGATGTAGTCAAAAAA
ATTCATGTAGTTACGTAACAATATCTGATTCACAAGGAAGCCAACTCTATGTCTTGTGTT
GGGACAGTTCATAATGTAGTTCCTAGACCACTTTTGCGAATTGTTCTTGTCACCAGATGT
GTTCAGACATTGCTGTGCAGTTGTGGGGAAGGGAGGGGGAAGGTGAGGGAGATAAACGTT
TCGGTCTTTTTGTTTTTACCTTCCCCAGGAGGGGACAGTCTGGTCAACTTGCTCCAATAG
CGCAATAAAGACATTGCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGTTACTAACAGGATAAGAAGGGGGCAGATCTTTGGCTTCTCCTTGGTTATGTCGCAA
CTTCAGGATTGGGTGAGGCAGATAAATGAAACCCGCTCCAGGGTCACTGTTCTGACCTAA
GCTCTTAACCGAGAGCCAGCTGGACATTCTTCCCCAAATTGCCGGATTGAAATCTTGCTG
GTTTTACTGAGTAATGCCAGACTGACTGCTACCAGGCGTGCCTGGATGGCTTTGCGCCTG
GGGTCGAACCCACTTGAGCAGCAAGCTGCTCAGGATTGGGCGCAGGGAATCCCTTCGTCT
GGTTCTAAAACTCGGTGTTCCAAATGTCTCTTACAAGAAATGGAAACAAGGCTGAGGATA
CATGCCTCTGACATCAGACTGTGTTCTGCTCCTTGTCTGGCGGGCGTTAGGGTGTGCAGA
GAGCGGGCGAGCACCATCCACTGTCTGCACTTGGCGGGCTCATGGGGCAGGGCTGCTCTT
CCCAAGCCCCACGTTCCTTCATGCTCTTCTCTCCTTGTTCGTTCTGGAGTTCGTTGCTTT
GTGGGAACTAAGACCTAGAGACATTTGGAGAATTTGGCAAGTATTTGCTTGATCTCGAGC
CTGTGGAGATGGTATCGGGACCAGTCTGGTAACTACGTGGAGGGTCCTGTGCATCCCCTT
TGCTCCATGGTCTTGGCACAGACCCTGGCCTCCTTCCTCGGGATCCCCTCTGTCCTGTCC
CACCCTCTGGGCCCTGGGCTTCTCTCTTGGCATCTGAACTGTAGCCTCCCTGAGGCAGAG
TAGCGACAGACCACAACCAGAGGGGCTTATTGTTTTCCTGGCTAGAAAAGCTGGCCACCA
GTGGGGAAGCAGCGTGGGGCTGGCTGGACCCTGGTCCTCCACCCATCTTTCCTAGGTGGA
GCTTTCATCACAGAACAGTGCTGTCTCCATCTGGCCACGGATGCTAACTGAACCTTGGCC
ATGGCTCAGGCCTGTACAGGCTAGCTTTATCCTCACCACTGATTTGGCCAAGGTTGTGCA
CTTCCTAGTATCTTGCCCTACCCTGTCTCCACGCCTGGATGGGACCTCCTGCTTACTTTG
GACCTCATGTGCTTTGAAGAAGCTTTGAGAGCCAGTGTGGTGTCTTCCATGGGTCTCCTC
TCCCTGCAGCAAGAAACTAGCCTCATGGGTCCCCTTGAGCCAAATATCATCTGGGCAAGT
CCTGGTTCCTCGAGGTGGTCTCTGTTGCCAGTTAAAACTCCTTAGTAGGTCTCTGTGCCT
CAGTGGCCTCAAAGCAGAGGGTCCAGAGGGTCTCTGCTGTCAACTGCTCAGCCTTGCTCG
AGCTCCAGCCACTTGTGATAACCAACCTTGTTCCCTTACCAATTCCAGCATGTGACTTTG
GTGCCCTGTTGTTACTCGTGAAAAACCTCTTCTTCTGTTGTCTTTGATGTAGTCAAAAAA
ATTCATGTAGTTACGTAACAATATCTGATTCACAAGGAAGCCAACTCTATGTCTTGTGTT
GGGACAGTTCATAATGTAGTTCCTAGACCACTTTTGCGAATTGTTCTTGTCACCAGATGT
GTTCAGACATTGCTGTGCAGTTGTGGGGAAGGGAGGGGGAAGGTGAGGGAGATAAACGTT
TCGGTCTTTTTGTTTTTACCTTCCCCAGGAGGGGACAGTCTGGTCAACTTGCTCCAATAG
CGCAATAAAGACATTGCAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               171-319, + strand, RNAz p=0.706397
               

               
               827-984, - strand, RNAz p=0.994947
               

               
               1216-1348, - strand, RNAz p=0.83508
               

               
               1548-1703, - strand, RNAz p=0.951295

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-319, + strand, RNAz p=0.706397
               

               
               827-984, - strand, RNAz p=0.994947
               

               
               1216-1348, - strand, RNAz p=0.83508
               

               
               1548-1703, - strand, RNAz p=0.951295

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               240-308, + strand, RNAmicro p=0.931261

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               240-308, + strand, RNAmicro p=0.931261

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_003629, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003629, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               21-1703, gnl|bosTau2|chr3 (70203387-70205096)
               

               
               21-1703, gnl|Hg17|chr1 (46219538-46217836)
               

               
               21-1703, gnl|Mm7|chr4 (115677929-115679495)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-1703, gnl|bosTau2|chr3 (70203387-70205096)
               

               
               21-1703, gnl|Hg17|chr1 (46219538-46217836)
               

               
               21-1703, gnl|Mm7|chr4 (115677929-115679495)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               cte (0.29274)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               ctl (0.153069)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               ctl (0.153069)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               eje (0.0988338)

	171-319, + strand, RNAz p=0.706397
	827-984, - strand, RNAz p=0.994947
	1216-1348, - strand, RNAz p=0.83508
	1548-1703, - strand, RNAz p=0.951295

	21-1703, gnl\|bosTau2\|chr3 (70203387-70205096)
	21-1703, gnl\|Hg17\|chr1 (46219538-46217836)
	21-1703, gnl\|Mm7\|chr4 (115677929-115679495)

	cte (0.29274)
	pgl (0.236967)
	ece (0.229305)
	cmu (0.186393)
	fbs (0.175346)
	fhi (0.169578)
	nco (0.161734)
	ctl (0.153069)
	hyp (0.142837)
	pty (0.142714)
	ssp (0.13552)
	eje (0.0988338)