Non-Coding RNA Search

Ss1.1-rhyp32c_b14.5

Sequence:


               
               TTCCCCTCTTCTTTTCTTTCTGTAACGATGATGTTATATTTGGTTTGCAGTCTGAATGTA
GAGAAAGTGAAGTGATCCCCAAACTCTTATCCGCCCCCCTTCTTTTCTCCAAGTCCCACC
ATGCCCTCTGGGCAATAGAAGGTGTCCCAGGGGTAGGCTCGCCCCTCACCGTCACTCTTT
GGAGCCATGAAGACAAGCTGAATGGTCTTACGGGATCCCAGAATAATGTCGGGTCTCCCA
AGAACAAAGGGATAAAAATCGGACCTGGCTGCCTGGGAGAGGCCTGGATGGAACTGAGGG
CAGAATTCCTTTCATCCTCCCCTCACGCCCCGCCACTGACCCAGTCACAGCCTCTCCCGG
CCTTCCCCGTCTCCTTCTGAAAGTCGATGGCCGAGAAGACCCTATGGTCTCCCGTCTCCC
CACCAAGGCGACGGGTTCTCTGAAAACTCCACCCAGACCACTGGAAGGAGGCTTCTGGCC
TTTGTTCCTGTCCATGAACCACTGTCTTTGTCCCCCAGTGCAAGCTCCCTCCCTGTGCCC
TGCAGTTTGGGGGTCACAGGGCAGGCTAGGAAGCCAGCAGTTCCAGGAGCAGACCAAGGC
AGCGCTTGATCCCTCCTCCTCTAGCTCAGGGGATGCTGGTCGGTGGCACCTGCTCTGAGT
TGCCCCTGTGACTGCGCTCAGAGGCACTCCCGAGGTTCCCACCACAGGCAGCTGGACCTC
CCTCCCCCCTCTTCCGACTTTTGTTTCTCTTGCCTGTCTTTAGGCCTCCAACAGGTCCCC
TGGTAGTGCTCAGGGCTTGGGACTAGACACTCCTGCCCTACTGACTCTCCTCTCTAGTCT
GCCAGGGCCTGCCCAGCGAGGTGGACCAGAGACCCAGGACTTTTCTCAGTAGCCAGTCCA
ACCCCCCCAAATTATCTTTCTACCAGTTCAAGTTGAGAGAGAGAAAAAATTTCAGCAACC
CCCCAGCACTTGAGCTACTCAAGTGTAAGGGGCCAGAAGGGACAGTGTGTTTAAAACAGC
CCCTAGACAGCCTTAGACCTGTGGCTCCCCCAGTCCCAGGGACCTCACTTCTTTCTGGCA
GAAACGTGGGCAGGGGGTCCAGCCTGAGCACAGGAATCAAAGGGAAAACGCACTCAAACT
GCCCCCACATCTACCAGCCATCCGCAGGGGGCTGTAACACAGCCCTAGCCTTCTGAAATG
TGCCACTTAGGACGAGCGTCTCCAAAGGGAAGAGGATTATCGGCTGTCCCCAGCAGCTTG
TGCCAAGAGCCTTTGGAGGCTGGGGAAGAGATTTCCAGAGGAGCCCCTTCCCCTTGCTCA
GAGCCATTTTCGGAGGAAGTGGGGTCCAGCAACCTTTGGGGGAAGGCCTGGTGCTGCTCA
GCACACACAAGCATCAGGTCAGATCATTGTAATAAAAAAATGTGAATGAAGTTTAGATTC
CGCTTTGGGGGGAACAAGATAAACCACCACCCCACCATATGTGTGTGACTTCTCAATTTC
CCGCTGCAACTTCCATTTTTTAAATAGGAATTTTCAGCCCCCTGTGCTTGTCTAATGTCT
GCTCGGAACAATTCGAGACCCTGTTACTGTTTTAAAATGCATGCATGTTAAGATGAATCT
CCAACCCGAGGAAAAAAATAAAACTCAAAAAAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCCTCTTCTTTTCTTTCTGTAACGATGATGTTATATTTGGTTTGCAGTCTGAATGTA
GAGAAAGTGAAGTGATCCCCAAACTCTTATCCGCCCCCCTTCTTTTCTCCAAGTCCCACC
ATGCCCTCTGGGCAATAGAAGGTGTCCCAGGGGTAGGCTCGCCCCTCACCGTCACTCTTT
GGAGCCATGAAGACAAGCTGAATGGTCTTACGGGATCCCAGAATAATGTCGGGTCTCCCA
AGAACAAAGGGATAAAAATCGGACCTGGCTGCCTGGGAGAGGCCTGGATGGAACTGAGGG
CAGAATTCCTTTCATCCTCCCCTCACGCCCCGCCACTGACCCAGTCACAGCCTCTCCCGG
CCTTCCCCGTCTCCTTCTGAAAGTCGATGGCCGAGAAGACCCTATGGTCTCCCGTCTCCC
CACCAAGGCGACGGGTTCTCTGAAAACTCCACCCAGACCACTGGAAGGAGGCTTCTGGCC
TTTGTTCCTGTCCATGAACCACTGTCTTTGTCCCCCAGTGCAAGCTCCCTCCCTGTGCCC
TGCAGTTTGGGGGTCACAGGGCAGGCTAGGAAGCCAGCAGTTCCAGGAGCAGACCAAGGC
AGCGCTTGATCCCTCCTCCTCTAGCTCAGGGGATGCTGGTCGGTGGCACCTGCTCTGAGT
TGCCCCTGTGACTGCGCTCAGAGGCACTCCCGAGGTTCCCACCACAGGCAGCTGGACCTC
CCTCCCCCCTCTTCCGACTTTTGTTTCTCTTGCCTGTCTTTAGGCCTCCAACAGGTCCCC
TGGTAGTGCTCAGGGCTTGGGACTAGACACTCCTGCCCTACTGACTCTCCTCTCTAGTCT
GCCAGGGCCTGCCCAGCGAGGTGGACCAGAGACCCAGGACTTTTCTCAGTAGCCAGTCCA
ACCCCCCCAAATTATCTTTCTACCAGTTCAAGTTGAGAGAGAGAAAAAATTTCAGCAACC
CCCCAGCACTTGAGCTACTCAAGTGTAAGGGGCCAGAAGGGACAGTGTGTTTAAAACAGC
CCCTAGACAGCCTTAGACCTGTGGCTCCCCCAGTCCCAGGGACCTCACTTCTTTCTGGCA
GAAACGTGGGCAGGGGGTCCAGCCTGAGCACAGGAATCAAAGGGAAAACGCACTCAAACT
GCCCCCACATCTACCAGCCATCCGCAGGGGGCTGTAACACAGCCCTAGCCTTCTGAAATG
TGCCACTTAGGACGAGCGTCTCCAAAGGGAAGAGGATTATCGGCTGTCCCCAGCAGCTTG
TGCCAAGAGCCTTTGGAGGCTGGGGAAGAGATTTCCAGAGGAGCCCCTTCCCCTTGCTCA
GAGCCATTTTCGGAGGAAGTGGGGTCCAGCAACCTTTGGGGGAAGGCCTGGTGCTGCTCA
GCACACACAAGCATCAGGTCAGATCATTGTAATAAAAAAATGTGAATGAAGTTTAGATTC
CGCTTTGGGGGGAACAAGATAAACCACCACCCCACCATATGTGTGTGACTTCTCAATTTC
CCGCTGCAACTTCCATTTTTTAAATAGGAATTTTCAGCCCCCTGTGCTTGTCTAATGTCT
GCTCGGAACAATTCGAGACCCTGTTACTGTTTTAAAATGCATGCATGTTAAGATGAATCT
CCAACCCGAGGAAAAAAATAAAACTCAAAAAAGCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               556-673, - strand, RNAz p=0.520397
               

               
               745-1157, - strand, RNAz p=0.999958

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               556-673, - strand, RNAz p=0.520397
               

               
               745-1157, - strand, RNAz p=0.999958

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               612-699, + strand, RNAmicro p=0.944684

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               612-699, + strand, RNAmicro p=0.944684

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               745-898, BP442227 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP442227.1|), blast E-value=0, identity=98.71% 
               

               
               1030-1017, 1392430 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN543572.1|), 
blast E-value=0.00000000000003, identity=91.67% 
               

               
               1030-1017, 1596140 MARC 11BOV Bos taurus cDNA 3', mRNA sequence 
(gb|DY461683.1|), blast E-value=0.000000000002, identity=92.98% 
               

               
               1030-1017, 1596472 MARC 11BOV Bos taurus cDNA 3', mRNA sequence 
(gb|DY461936.1|), blast E-value=0.000000000002, identity=92.98% 
               

               
               1030-1157, 1605839 MARC 11BOV Bos taurus cDNA 3', mRNA sequence 
(gb|DY465370.1|), blast E-value=2e-34, identity=91.47% 
               

               
               1030-1017, 1608431 MARC 11BOV Bos taurus cDNA 5', mRNA sequence 
(gb|DY466517.1|), blast E-value=0.00000000000003, identity=91.67%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               745-898, BP442227 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP442227.1|), blast E-value=0, identity=98.71% 
               

               
               1030-1017, 1392430 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN543572.1|), 
blast E-value=0.00000000000003, identity=91.67% 
               

               
               1030-1017, 1596140 MARC 11BOV Bos taurus cDNA 3', mRNA sequence 
(gb|DY461683.1|), blast E-value=0.000000000002, identity=92.98% 
               

               
               1030-1017, 1596472 MARC 11BOV Bos taurus cDNA 3', mRNA sequence 
(gb|DY461936.1|), blast E-value=0.000000000002, identity=92.98% 
               

               
               1030-1157, 1605839 MARC 11BOV Bos taurus cDNA 3', mRNA sequence 
(gb|DY465370.1|), blast E-value=2e-34, identity=91.47% 
               

               
               1030-1017, 1608431 MARC 11BOV Bos taurus cDNA 5', mRNA sequence 
(gb|DY466517.1|), blast E-value=0.00000000000003, identity=91.67%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               6-1656, gnl|bosTau2|chr19 (35814535-35812915)
               

               
               6-1656, gnl|Hg17|chr17 (34177062-34175476)
               

               
               6-1656, gnl|Mm7|chr11 (97825688-97824204)
               


               
               1142-1651, gnl|bosTau2|chr1 (101749714-101749199)
               

               
               1142-1651, gnl|Hg17|chr17 (34175978-34175480)
               

               
               1142-1651, gnl|Mm7|chr11 (97824675-97824208)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1656, gnl|bosTau2|chr19 (35814535-35812915)
               

               
               6-1656, gnl|Hg17|chr17 (34177062-34175476)
               

               
               6-1656, gnl|Mm7|chr11 (97825688-97824204)
               


               
               1142-1651, gnl|bosTau2|chr1 (101749714-101749199)
               

               
               1142-1651, gnl|Hg17|chr17 (34175978-34175480)
               

               
               1142-1651, gnl|Mm7|chr11 (97824675-97824208)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ece (0.687916)
               

               
               ebs (0.591506)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.687916)
               

               
               ebs (0.591506)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	556-673, - strand, RNAz p=0.520397
	745-1157, - strand, RNAz p=0.999958

	745-898, BP442227 full-length enriched swine cDNA library, adult liver Sus (dbj\|BP442227.1\|), blast E-value=0, identity=98.71%
	1030-1017, 1392430 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN543572.1\|), blast E-value=0.00000000000003, identity=91.67%
	1030-1017, 1596140 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY461683.1\|), blast E-value=0.000000000002, identity=92.98%
	1030-1017, 1596472 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY461936.1\|), blast E-value=0.000000000002, identity=92.98%
	1030-1157, 1605839 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY465370.1\|), blast E-value=2e-34, identity=91.47%
	1030-1017, 1608431 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|DY466517.1\|), blast E-value=0.00000000000003, identity=91.67%

	6-1656, gnl\|bosTau2\|chr19 (35814535-35812915)
	6-1656, gnl\|Hg17\|chr17 (34177062-34175476)
	6-1656, gnl\|Mm7\|chr11 (97825688-97824204)

	1142-1651, gnl\|bosTau2\|chr1 (101749714-101749199)
	1142-1651, gnl\|Hg17\|chr17 (34175978-34175480)
	1142-1651, gnl\|Mm7\|chr11 (97824675-97824208)

	ece (0.687916)
	ebs (0.591506)
	ecc (0.23007)
	mas (0.210305)
	hyp (0.142837)
	ssp (0.13552)
	eep (0.122564)
	eje (0.0988338)