Non-Coding RNA Search

Ss1.1-rhyp32c_g19.5

Sequence:


               
               GTGTGCATTTCTCACAGGTGTGTGTGCCTACACCCACCTCCCAGCTGCTGCTGCCCACAG
AGCGGGCTCCAGCTGGAGGTCAGCACTGTGTCGCTCTGGCTGGGCCTCTAAGTAGTTTTA
TTTCTCCAAAGCTGAGCCAGTCTCCTGGCCTAGCTCAGGTTGCCAAAACACTTGAAGTTG
CTAGAGCCACGGTAGAACCTGCCATTGAGTCCCATTTGCGTGTCTTATGGAGAGAGGCCC
AGAGAGGGGACGTGACTTGCCCAAAGTCACACAGATAGTTGGTGGCTGAGCTGGGGCCAG
GATTAAGCTTCCTGATTCTCAGATCACCATAGACAGGGTTCGGTTCAAGCAAGAGAAGCT
CCCTTAATCCTATACCCATCTTCCTTCCAACTCCCCAGCTCCCAAATCTTGTAGACAAAC
TACTTAGACGTTGCCCTGCAACCCCATCCAGCTGTTAATTCTGCCCAGGAGAGAATGATT
GGGTGACAGCTGAGAAGTTGAAGGGCGAGCTGTGGGATTATTAGCAGATACCTCGTCCCC
TCCTCCTCCTCTCCCTGCTCCCCTCCTTCCTCCTCCTCCCTCTGATGATCTGCCCACCCT
CATTCTCCCTCCCCGGTGCTGTACCCGTTCCCTCTGTGGACCACATTTATCATCTTATAC
CCTTTTATGTGACCTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGCATTTCTCACAGGTGTGTGTGCCTACACCCACCTCCCAGCTGCTGCTGCCCACAG
AGCGGGCTCCAGCTGGAGGTCAGCACTGTGTCGCTCTGGCTGGGCCTCTAAGTAGTTTTA
TTTCTCCAAAGCTGAGCCAGTCTCCTGGCCTAGCTCAGGTTGCCAAAACACTTGAAGTTG
CTAGAGCCACGGTAGAACCTGCCATTGAGTCCCATTTGCGTGTCTTATGGAGAGAGGCCC
AGAGAGGGGACGTGACTTGCCCAAAGTCACACAGATAGTTGGTGGCTGAGCTGGGGCCAG
GATTAAGCTTCCTGATTCTCAGATCACCATAGACAGGGTTCGGTTCAAGCAAGAGAAGCT
CCCTTAATCCTATACCCATCTTCCTTCCAACTCCCCAGCTCCCAAATCTTGTAGACAAAC
TACTTAGACGTTGCCCTGCAACCCCATCCAGCTGTTAATTCTGCCCAGGAGAGAATGATT
GGGTGACAGCTGAGAAGTTGAAGGGCGAGCTGTGGGATTATTAGCAGATACCTCGTCCCC
TCCTCCTCCTCTCCCTGCTCCCCTCCTTCCTCCTCCTCCCTCTGATGATCTGCCCACCCT
CATTCTCCCTCCCCGGTGCTGTACCCGTTCCCTCTGTGGACCACATTTATCATCTTATAC
CCTTTTATGTGACCTTTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-379, + strand, RNAz p=0.988927

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-379, + strand, RNAz p=0.988927

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC008219, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC008219, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-684, gnl|bosTau2|chr10 (11881442-11882133)
               

               
               3-684, gnl|Hg17|chr14 (23957611-23958294)
               

               
               3-684, gnl|Mm7|chr14 (50741382-50742062)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-684, gnl|bosTau2|chr10 (11881442-11882133)
               

               
               3-684, gnl|Hg17|chr14 (23957611-23958294)
               

               
               3-684, gnl|Mm7|chr14 (50741382-50742062)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cov (0.132153)

	3-684, gnl\|bosTau2\|chr10 (11881442-11882133)
	3-684, gnl\|Hg17\|chr14 (23957611-23958294)
	3-684, gnl\|Mm7\|chr14 (50741382-50742062)