Non-Coding RNA Search

Ss1.1-rhyp32c_i22.5

Sequence:


               
               CGCTGGCGGTTGCTGTCAGCTGATTCCCCGGCTTGGTGGCAGCGGCAGCCGCGGCAATGG
ACTTTCTCCTGGGGAACCCGTTCAGCTCTCCGGGGGGACAGCGCATCGAGAAAGCTACAG
ATGGCTCCCTGCAGAGCGAGGACTGGGCGCTCAACATGGAGATTTGCGACATCATCAACG
AGACCGAGGAGGGCCCCAAGGATGCCTTCCGAGCAGTGAAGAAGAGAATCGTGGGGAATA
AGAACTTCCACGAGGTGATGTTGGCTCTCACGGGCTTGGAAACCTGCGTCAAGAACTGCG
GGCACCGCTTCCATGTGCTGGTGGCCAGCCAGGACTTCGTGGAGGGCGTGCTGGTGAGGA
CCATCCTGCCCAAGAACAACCCGCCCACCATCGTGCACGACAAGGTGCTCAACCTCATCC
AGTCCTGGGCTGACGCGTTCCGCAGCTCGCCTGACTTGACAGGTGTGGTGGCCGTCTATG
AGGACCTGCGCAGGAAGGGCCTGGAGTTCCCCATGACCGACCTGGACATGCTGTCACCCA
TCCACACGCCCCAGAGGACCGTGTTCAACTCAGAGACACCATCAGGACAGAATTCTGCGG
GCACCGACGCCAGTCATCGAGGGGACTCCAGCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGGCGGTTGCTGTCAGCTGATTCCCCGGCTTGGTGGCAGCGGCAGCCGCGGCAATGG
ACTTTCTCCTGGGGAACCCGTTCAGCTCTCCGGGGGGACAGCGCATCGAGAAAGCTACAG
ATGGCTCCCTGCAGAGCGAGGACTGGGCGCTCAACATGGAGATTTGCGACATCATCAACG
AGACCGAGGAGGGCCCCAAGGATGCCTTCCGAGCAGTGAAGAAGAGAATCGTGGGGAATA
AGAACTTCCACGAGGTGATGTTGGCTCTCACGGGCTTGGAAACCTGCGTCAAGAACTGCG
GGCACCGCTTCCATGTGCTGGTGGCCAGCCAGGACTTCGTGGAGGGCGTGCTGGTGAGGA
CCATCCTGCCCAAGAACAACCCGCCCACCATCGTGCACGACAAGGTGCTCAACCTCATCC
AGTCCTGGGCTGACGCGTTCCGCAGCTCGCCTGACTTGACAGGTGTGGTGGCCGTCTATG
AGGACCTGCGCAGGAAGGGCCTGGAGTTCCCCATGACCGACCTGGACATGCTGTCACCCA
TCCACACGCCCCAGAGGACCGTGTTCAACTCAGAGACACCATCAGGACAGAATTCTGCGG
GCACCGACGCCAGTCATCGAGGGGACTCCAGCCAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7546432|pdb|1ELK|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7546432|pdb|1ELK|B

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               4-108, gnl|bosTau2|chr5 (43663248-43663144)
               

               
               4-108, gnl|canFam2|chr10 (31893573-31893432)
               

               
               4-108, gnl|echTel1|scaffold_306437 (43376-43234)
               

               
               4-108, gnl|galGal2|chr1 (48851984-48851885)
               

               
               4-108, gnl|hg17|chr22 (34020401-34020543)
               

               
               4-108, gnl|Hg17|chr22 (34020423-34020527)
               

               
               4-108, gnl|loxAfr1|scaffold_17230 (9034-9175)
               

               
               4-108, gnl|mm7|chr8 (73575622-73575764)
               

               
               4-108, gnl|Mm7|chr8 (73575644-73575748)
               

               
               4-108, gnl|monDom2|scaffold_34 (3019350-3019204)
               

               
               4-108, gnl|oryCun1|scaffold_137037 (12331-12491)
               

               
               4-108, gnl|rheMac2|chr10 (79210035-79210173)
               

               
               4-108, gnl|rn3|chr19 (13895331-13895473)
               


               
               268-422, gnl|bosTau2|chr19 (24421990-24421837)
               

               
               268-422, gnl|Hg17|chr17 (17737853-17737700)
               

               
               268-422, gnl|Mm7|chr11 (60352029-60351876)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-108, gnl|bosTau2|chr5 (43663248-43663144)
               

               
               4-108, gnl|canFam2|chr10 (31893573-31893432)
               

               
               4-108, gnl|echTel1|scaffold_306437 (43376-43234)
               

               
               4-108, gnl|galGal2|chr1 (48851984-48851885)
               

               
               4-108, gnl|hg17|chr22 (34020401-34020543)
               

               
               4-108, gnl|Hg17|chr22 (34020423-34020527)
               

               
               4-108, gnl|loxAfr1|scaffold_17230 (9034-9175)
               

               
               4-108, gnl|mm7|chr8 (73575622-73575764)
               

               
               4-108, gnl|Mm7|chr8 (73575644-73575748)
               

               
               4-108, gnl|monDom2|scaffold_34 (3019350-3019204)
               

               
               4-108, gnl|oryCun1|scaffold_137037 (12331-12491)
               

               
               4-108, gnl|rheMac2|chr10 (79210035-79210173)
               

               
               4-108, gnl|rn3|chr19 (13895331-13895473)
               


               
               268-422, gnl|bosTau2|chr19 (24421990-24421837)
               

               
               268-422, gnl|Hg17|chr17 (17737853-17737700)
               

               
               268-422, gnl|Mm7|chr11 (60352029-60351876)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	4-108, gnl\|bosTau2\|chr5 (43663248-43663144)
	4-108, gnl\|canFam2\|chr10 (31893573-31893432)
	4-108, gnl\|echTel1\|scaffold_306437 (43376-43234)
	4-108, gnl\|galGal2\|chr1 (48851984-48851885)
	4-108, gnl\|hg17\|chr22 (34020401-34020543)
	4-108, gnl\|Hg17\|chr22 (34020423-34020527)
	4-108, gnl\|loxAfr1\|scaffold_17230 (9034-9175)
	4-108, gnl\|mm7\|chr8 (73575622-73575764)
	4-108, gnl\|Mm7\|chr8 (73575644-73575748)
	4-108, gnl\|monDom2\|scaffold_34 (3019350-3019204)
	4-108, gnl\|oryCun1\|scaffold_137037 (12331-12491)
	4-108, gnl\|rheMac2\|chr10 (79210035-79210173)
	4-108, gnl\|rn3\|chr19 (13895331-13895473)

	268-422, gnl\|bosTau2\|chr19 (24421990-24421837)
	268-422, gnl\|Hg17\|chr17 (17737853-17737700)
	268-422, gnl\|Mm7\|chr11 (60352029-60351876)