Ss1.1-rhyp32c_n12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCTGCCACTGAATCTGGCTATAAAACCTTATTTGGCACTAAAAGGATCTGTAGCTTTT CCAGCTGAGAATGAAGTTCAGAATACTGAATCAACACAAGAAAAGAGAGAAATTGGGGAT GAAGAAAACTCAGCTAAATTTCCTATAGGAAGGAGAGATTTTGACATGCTCAGGTGTATG CTGGGAAGAGTTTATCGACCTTGTTGGCAAGTCTGATACCTGTTGGTCCATATCATCGTT TCAGAAGAAAACAAAATCATATAATTGCCTGGGGGGAAAAAGGCCCTTAATGTTACTATG ACTTGTATTATTTTAAATGTTTGTTTTAAAAGAAAGTGGTATTGAGTATATCAATAACTT AAATGATATGCTTTCCCTATTCATTAAACTTAGTGAATATTCTGCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCTGCCACTGAATCTGGCTATAAAACCTTATTTGGCACTAAAAGGATCTGTAGCTTTT CCAGCTGAGAATGAAGTTCAGAATACTGAATCAACACAAGAAAAGAGAGAAATTGGGGAT GAAGAAAACTCAGCTAAATTTCCTATAGGAAGGAGAGATTTTGACATGCTCAGGTGTATG CTGGGAAGAGTTTATCGACCTTGTTGGCAAGTCTGATACCTGTTGGTCCATATCATCGTT TCAGAAGAAAACAAAATCATATAATTGCCTGGGGGGAAAAAGGCCCTTAATGTTACTATG ACTTGTATTATTTTAAATGTTTGTTTTAAAAGAAAGTGGTATTGAGTATATCAATAACTT AAATGATATGCTTTCCCTATTCATTAAACTTAGTGAATATTCTGCAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-166, + strand, RNAz p=0.742503 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-166, + strand, RNAz p=0.742503 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-166, gnl|bosTau2|chr5 (37791515-37791350) | |
| 1-166, gnl|canFam2|chr15 (44046803-44047011) | |
| 1-166, gnl|canFam2|chr15 (44047007-44046812) | |
| 1-166, gnl|dasNov1|scaffold_105320 (1820-1605) | |
| 1-166, gnl|dasNov1|scaffold_105320 (1609-1811) | |
| 1-166, gnl|galGal2|chr1 (52071257-52071048) | |
| 1-166, gnl|galGal2|chr1 (52071052-52071250) | |
| 1-166, gnl|hg17|chr12 (101093197-101093405) | |
| 1-166, gnl|Hg17|chr12 (101093383-101093218) | |
| 1-166, gnl|hg17|chr5 (22178268-22178463) | |
| 1-166, gnl|loxAfr1|scaffold_16789 (15063-15270) | |
| 1-166, gnl|loxAfr1|scaffold_16789 (15266-15071) | |
| 1-166, gnl|mm7|chr10 (87650120-87649912) | |
| 1-166, gnl|mm7|chr10 (87649916-87650111) | |
| 1-166, gnl|Mm7|chr10 (87649932-87650097) | |
| 1-166, gnl|monDom2|scaffold_34 (11103761-11103550) | |
| 1-166, gnl|monDom2|scaffold_34 (11103554-11103752) | |
| 1-166, gnl|panTro1|chr10 (103558819-103559029) | |
| 1-166, gnl|panTro1|chr4 (44846709-44846514) | |
| 1-166, gnl|rheMac2|chr6 (22209112-22208906) | |
| 1-166, gnl|rheMac2|chr6 (22208910-22209104) | |
| 1-166, gnl|rn3|chr7 (24799251-24799043) | |
| 1-166, gnl|rn3|chr7 (24799047-24799242) | |
| 1-166, gnl|xenTro1|scaffold_230 (131328-131129) | |
| 1-166, gnl|xenTro1|scaffold_230 (131133-131328) | |
| 167-409, gnl|bosTau2|chr5 (37791068-37790835) | |
| 167-409, gnl|Hg17|chr12 (101092946-101092704) | |
| 167-409, gnl|Mm7|chr10 (87650351-87650586) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-166, gnl|bosTau2|chr5 (37791515-37791350) | |
| 1-166, gnl|canFam2|chr15 (44046803-44047011) | |
| 1-166, gnl|canFam2|chr15 (44047007-44046812) | |
| 1-166, gnl|dasNov1|scaffold_105320 (1820-1605) | |
| 1-166, gnl|dasNov1|scaffold_105320 (1609-1811) | |
| 1-166, gnl|galGal2|chr1 (52071257-52071048) | |
| 1-166, gnl|galGal2|chr1 (52071052-52071250) | |
| 1-166, gnl|hg17|chr12 (101093197-101093405) | |
| 1-166, gnl|Hg17|chr12 (101093383-101093218) | |
| 1-166, gnl|hg17|chr5 (22178268-22178463) | |
| 1-166, gnl|loxAfr1|scaffold_16789 (15063-15270) | |
| 1-166, gnl|loxAfr1|scaffold_16789 (15266-15071) | |
| 1-166, gnl|mm7|chr10 (87650120-87649912) | |
| 1-166, gnl|mm7|chr10 (87649916-87650111) | |
| 1-166, gnl|Mm7|chr10 (87649932-87650097) | |
| 1-166, gnl|monDom2|scaffold_34 (11103761-11103550) | |
| 1-166, gnl|monDom2|scaffold_34 (11103554-11103752) | |
| 1-166, gnl|panTro1|chr10 (103558819-103559029) | |
| 1-166, gnl|panTro1|chr4 (44846709-44846514) | |
| 1-166, gnl|rheMac2|chr6 (22209112-22208906) | |
| 1-166, gnl|rheMac2|chr6 (22208910-22209104) | |
| 1-166, gnl|rn3|chr7 (24799251-24799043) | |
| 1-166, gnl|rn3|chr7 (24799047-24799242) | |
| 1-166, gnl|xenTro1|scaffold_230 (131328-131129) | |
| 1-166, gnl|xenTro1|scaffold_230 (131133-131328) | |
| 167-409, gnl|bosTau2|chr5 (37791068-37790835) | |
| 167-409, gnl|Hg17|chr12 (101092946-101092704) | |
| 167-409, gnl|Mm7|chr10 (87650351-87650586) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.42851) |