Ss1.1-rhyp33c_a12.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTTTCCTTTCGCCGCTGCGGCAGCAGCCATGAGTATGCTCAGGCTTCAGAAGAGGCTT GCCTCCAGTGTCCTCCGCTGTGGCAAAAAGAAAGTCTGGTTGGACCCCAATGAGACTAAT GAAATCGCCAACGCCAACTCCCGTCAGCAGATCCGGAAGCTGATCAAAGATGGGCTGATC ATCCGGAAGCCTGTGACTGTCCATTCCCGGGCTCGATGCCGGAAAAACACCCTGGCCCGC CGGAAGGGCAGGCATATGGGCATCGGTAAGCGGAAGGGTACTGCCAATGCTCGAATGCCT GAGAAGGTAACTTGGATGAGGAGGATGAGAATTCTGCGCCGGCTGCTCAGAAGATACCGT GAATCTAAGAAGATTGACCGCCACATGTATCACAGTCTGTACCTGAAAGTGAAGGGGAAT GTGTTCAAAAACAAGCGGATTCTCATGGAGCACATCCACAAGCTGAAGGCGGACAAGGCT CGCAAGAAGCTTCTGGCGGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGC AAGCGCCGTGAAGAGCGGCTCCAGGCCAAGAAGGAGGAAATCATCAAGACTCTGTCCAAG GAGGAAGAGACCAAGAAATAAAGTTCTCCCCCTCCTCTCTGTACATAGTGGCCTTGGCAG TTACATAGATTCAATAAAAATGAGCCTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTTTCCTTTCGCCGCTGCGGCAGCAGCCATGAGTATGCTCAGGCTTCAGAAGAGGCTT GCCTCCAGTGTCCTCCGCTGTGGCAAAAAGAAAGTCTGGTTGGACCCCAATGAGACTAAT GAAATCGCCAACGCCAACTCCCGTCAGCAGATCCGGAAGCTGATCAAAGATGGGCTGATC ATCCGGAAGCCTGTGACTGTCCATTCCCGGGCTCGATGCCGGAAAAACACCCTGGCCCGC CGGAAGGGCAGGCATATGGGCATCGGTAAGCGGAAGGGTACTGCCAATGCTCGAATGCCT GAGAAGGTAACTTGGATGAGGAGGATGAGAATTCTGCGCCGGCTGCTCAGAAGATACCGT GAATCTAAGAAGATTGACCGCCACATGTATCACAGTCTGTACCTGAAAGTGAAGGGGAAT GTGTTCAAAAACAAGCGGATTCTCATGGAGCACATCCACAAGCTGAAGGCGGACAAGGCT CGCAAGAAGCTTCTGGCGGACCAGGCTGAGGCCCGCAGGTCTAAGACCAAGGAAGCACGC AAGCGCCGTGAAGAGCGGCTCCAGGCCAAGAAGGAGGAAATCATCAAGACTCTGTCCAAG GAGGAAGAGACCAAGAAATAAAGTTCTCCCCCTCCTCTCTGTACATAGTGGCCTTGGCAG TTACATAGATTCAATAAAAATGAGCCTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 4-645, - strand, RNAz p=0.909772 | |
| 145-263, + strand, RNAz p=0.698806 | |
| 537-654, - strand, RNAz p=0.882118 | |
| 559-670, - strand, RNAz p=0.983945 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 4-645, - strand, RNAz p=0.909772 | |
| 145-263, + strand, RNAz p=0.698806 | |
| 537-654, - strand, RNAz p=0.882118 | |
| 559-670, - strand, RNAz p=0.983945 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 4-283, gnl|bosTau2|chr3 (67819745-67819465) | |
| 4-283, gnl|Hg17|chr7 (102376364-102376087) | |
| 4-283, gnl|Mm7|chr8 (19469662-19469941) | |
| 145-270, gnl|bosTau2|chr19 (34769171-34769046) | |
| 145-270, gnl|canFam2|chr9 (26500987-26500857) | |
| 145-270, gnl|danRer3|chr3 (6212633-6212761) | |
| 145-270, gnl|dasNov1|scaffold_14644 (38440-38570) | |
| 145-270, gnl|echTel1|scaffold_322919 (22090-22220) | |
| 145-270, gnl|fr1|chrUn (43115812-43115942) | |
| 145-270, gnl|galGal2|chr27 (2616123-2616252) | |
| 145-270, gnl|hg17|chr17 (34612094-34612224) | |
| 145-270, gnl|Hg17|chr17 (34612098-34612223) | |
| 145-270, gnl|loxAfr1|scaffold_3686 (20307-20177) | |
| 145-270, gnl|mm7|chr11 (98137383-98137513) | |
| 145-270, gnl|Mm7|chr11 (98137387-98137512) | |
| 145-270, gnl|monDom2|scaffold_18 (48167097-48167224) | |
| 145-270, gnl|oryCun1|scaffold_184071 (11337-11217) | |
| 145-270, gnl|panTro1|chr19 (37847028-37847158) | |
| 145-270, gnl|rheMac2|chr16 (49277350-49277480) | |
| 145-270, gnl|rn3|chr10 (86804537-86804664) | |
| 145-270, gnl|tetNig1|chr2_random (161870-162000) | |
| 145-270, gnl|xenTro1|scaffold_334 (280723-280596) | |
| 286-707, gnl|bosTau2|chr3 (67819261-67818834) | |
| 286-707, gnl|Hg17|chr7 (102376081-102375655) | |
| 286-707, gnl|Mm7|chr8 (19469945-19470373) | |
| 498-670, gnl|bosTau2|chr19 (34767634-34767462) | |
| 498-670, gnl|canFam2|chr9 (26499326-26499199) | |
| 498-670, gnl|danRer3|chr3 (6213491-6213618) | |
| 498-670, gnl|dasNov1|scaffold_14644 (40375-40502) | |
| 498-670, gnl|echTel1|scaffold_222762 (14739-14863) | |
| 498-670, gnl|fr1|chrUn (43116446-43116576) | |
| 498-670, gnl|galGal2|chr27 (2617367-2617494) | |
| 498-670, gnl|hg17|chr17 (34614302-34614429) | |
| 498-670, gnl|Hg17|chr17 (34614304-34614474) | |
| 498-670, gnl|loxAfr1|scaffold_3686 (18542-18415) | |
| 498-670, gnl|mm7|chr11 (98139308-98139435) | |
| 498-670, gnl|Mm7|chr11 (98139310-98139483) | |
| 498-670, gnl|monDom2|scaffold_18 (48168652-48168779) | |
| 498-670, gnl|oryCun1|scaffold_184071 (10982-10858) | |
| 498-670, gnl|panTro1|chr19 (37849228-37849355) | |
| 498-670, gnl|rheMac2|chr16 (49279630-49279757) | |
| 498-670, gnl|rn3|chr10 (86806287-86806414) | |
| 498-670, gnl|tetNig1|chr3 (13083769-13083640) | |
| 498-670, gnl|xenTro1|scaffold_334 (277612-277485) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-283, gnl|bosTau2|chr3 (67819745-67819465) | |
| 4-283, gnl|Hg17|chr7 (102376364-102376087) | |
| 4-283, gnl|Mm7|chr8 (19469662-19469941) | |
| 145-270, gnl|bosTau2|chr19 (34769171-34769046) | |
| 145-270, gnl|canFam2|chr9 (26500987-26500857) | |
| 145-270, gnl|danRer3|chr3 (6212633-6212761) | |
| 145-270, gnl|dasNov1|scaffold_14644 (38440-38570) | |
| 145-270, gnl|echTel1|scaffold_322919 (22090-22220) | |
| 145-270, gnl|fr1|chrUn (43115812-43115942) | |
| 145-270, gnl|galGal2|chr27 (2616123-2616252) | |
| 145-270, gnl|hg17|chr17 (34612094-34612224) | |
| 145-270, gnl|Hg17|chr17 (34612098-34612223) | |
| 145-270, gnl|loxAfr1|scaffold_3686 (20307-20177) | |
| 145-270, gnl|mm7|chr11 (98137383-98137513) | |
| 145-270, gnl|Mm7|chr11 (98137387-98137512) | |
| 145-270, gnl|monDom2|scaffold_18 (48167097-48167224) | |
| 145-270, gnl|oryCun1|scaffold_184071 (11337-11217) | |
| 145-270, gnl|panTro1|chr19 (37847028-37847158) | |
| 145-270, gnl|rheMac2|chr16 (49277350-49277480) | |
| 145-270, gnl|rn3|chr10 (86804537-86804664) | |
| 145-270, gnl|tetNig1|chr2_random (161870-162000) | |
| 145-270, gnl|xenTro1|scaffold_334 (280723-280596) | |
| 286-707, gnl|bosTau2|chr3 (67819261-67818834) | |
| 286-707, gnl|Hg17|chr7 (102376081-102375655) | |
| 286-707, gnl|Mm7|chr8 (19469945-19470373) | |
| 498-670, gnl|bosTau2|chr19 (34767634-34767462) | |
| 498-670, gnl|canFam2|chr9 (26499326-26499199) | |
| 498-670, gnl|danRer3|chr3 (6213491-6213618) | |
| 498-670, gnl|dasNov1|scaffold_14644 (40375-40502) | |
| 498-670, gnl|echTel1|scaffold_222762 (14739-14863) | |
| 498-670, gnl|fr1|chrUn (43116446-43116576) | |
| 498-670, gnl|galGal2|chr27 (2617367-2617494) | |
| 498-670, gnl|hg17|chr17 (34614302-34614429) | |
| 498-670, gnl|Hg17|chr17 (34614304-34614474) | |
| 498-670, gnl|loxAfr1|scaffold_3686 (18542-18415) | |
| 498-670, gnl|mm7|chr11 (98139308-98139435) | |
| 498-670, gnl|Mm7|chr11 (98139310-98139483) | |
| 498-670, gnl|monDom2|scaffold_18 (48168652-48168779) | |
| 498-670, gnl|oryCun1|scaffold_184071 (10982-10858) | |
| 498-670, gnl|panTro1|chr19 (37849228-37849355) | |
| 498-670, gnl|rheMac2|chr16 (49279630-49279757) | |
| 498-670, gnl|rn3|chr10 (86806287-86806414) | |
| 498-670, gnl|tetNig1|chr3 (13083769-13083640) | |
| 498-670, gnl|xenTro1|scaffold_334 (277612-277485) |
| Expressed library(ies): 72 entry(ies) | More info |
| Expressed library(ies): 72 entry(ies) | Help | Less info |
| cag (3.62867) | |
| lnt (2.41924) | |
| med (2.32504) | |
| ill (2.2827) | |
| eje (2.27318) | |
| csp (2.09542) | |
| eru (2.04082) | |
| jca (1.93732) | |
| mcp (1.87713) | |
| nmm (1.85923) | |
| nep (1.83925) | |
| fty (1.7584) | |
| ton (1.755) | |
| eep (1.7159) | |
| cly (1.68899) | |
| cga (1.67457) | |
| ecc (1.61049) | |
| ece (1.60514) | |
| elu (1.54143) | |
| nlu (1.53345) | |
| nco (1.4556) | |
| pty (1.42714) | |
| nbm (1.39054) | |
| nje (1.32736) | |
| cov (1.32153) | |
| fcc (1.18671) | |
| hyp (1.14269) | |
| ese (1.13852) | |
| nca (1.09499) | |
| fhi (1.01747) | |
| fli (1.0144) | |
| col (0.975039) | |
| eli (0.910885) | |
| fbs (0.876732) | |
| pgl (0.829384) | |
| fat (0.737137) | |
| ebs (0.709807) | |
| eye (0.682012) | |
| ute (0.663922) | |
| mas (0.630915) | |
| sme (0.610874) | |
| ldo (0.582016) | |
| duo (0.518403) | |
| pro (0.512033) | |
| cut (0.509771) | |
| jej (0.494609) | |
| hlv (0.417769) | |
| amn (0.417711) | |
| hea (0.408998) | |
| thg (0.380373) | |
| sin (0.349895) | |
| cli (0.305623) | |
| cst (0.280073) | |
| ssp (0.271039) | |
| lyg (0.266205) | |
| bla (0.248694) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| sag (0.182715) | |
| gul (0.177588) | |
| cje (0.165235) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cty (0.10408) |
| Expressed library(ies): 72 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (3.62867) | |
| lnt (2.41924) | |
| med (2.32504) | |
| ill (2.2827) | |
| eje (2.27318) | |
| csp (2.09542) | |
| eru (2.04082) | |
| jca (1.93732) | |
| mcp (1.87713) | |
| nmm (1.85923) | |
| nep (1.83925) | |
| fty (1.7584) | |
| ton (1.755) | |
| eep (1.7159) | |
| cly (1.68899) | |
| cga (1.67457) | |
| ecc (1.61049) | |
| ece (1.60514) | |
| elu (1.54143) | |
| nlu (1.53345) | |
| nco (1.4556) | |
| pty (1.42714) | |
| nbm (1.39054) | |
| nje (1.32736) | |
| cov (1.32153) | |
| fcc (1.18671) | |
| hyp (1.14269) | |
| ese (1.13852) | |
| nca (1.09499) | |
| fhi (1.01747) | |
| fli (1.0144) | |
| col (0.975039) | |
| eli (0.910885) | |
| fbs (0.876732) | |
| pgl (0.829384) | |
| fat (0.737137) | |
| ebs (0.709807) | |
| eye (0.682012) | |
| ute (0.663922) | |
| mas (0.630915) | |
| sme (0.610874) | |
| ldo (0.582016) | |
| duo (0.518403) | |
| pro (0.512033) | |
| cut (0.509771) | |
| jej (0.494609) | |
| hlv (0.417769) | |
| amn (0.417711) | |
| hea (0.408998) | |
| thg (0.380373) | |
| sin (0.349895) | |
| cli (0.305623) | |
| cst (0.280073) | |
| ssp (0.271039) | |
| lyg (0.266205) | |
| bla (0.248694) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| sag (0.182715) | |
| gul (0.177588) | |
| cje (0.165235) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cty (0.10408) |