Non-Coding RNA Search

Ss1.1-rhyp33c_a5.5

Sequence:


               
               TTTTTTTTTTATTAATTAAACGAAGGTTTATTTCAAAATTAGTCTTCGGGTATAAGCTGG
TTTTGAGGGCTAGAGCCGGAGTACATCATGAGTGGTGACAGCATCTGCCATCCTCCGCAG
ACATGGGCGGGGAGGAGGCAACCACACCAGCCCTGCCCGTCGGTCATGCATCCAAGGGTT
ACTAGGACTAGAAGCCAACAGCAAAGGACCCCGCGCGCTTGCTCATTTTAATCCGGATTA
AGCTATACACGTTTAAATACACGTCGGAGGCTACGTGGTGTCATGCAGTCCCTGGGGTGG
GATGGCTCTTGCTCAGTGACCTCCACAGCAAGGCTGCTCCCAAGGGCAAGGTTAAGTAGG
ACAGAGCACTTTTAAAATGTAGTCCGTCAGCAAAGTGGGCACCTTCTCATTATCTTCCTT
CATGGCAAAGAGAATGTTGGTCAGCATCTGGAGGTCTTCCACCGACGGGGGCGAGGCCTT
CTTCTCATAAGGGATGACTGTGTTCAGATACTGCTTGTCAGTTCCTGAGGGGCCAAAAGT
CTGGCGGATGCCGCTCTGCAGGATGTTGGAGATGCCTTCCATGCTGAAGCGCTTGAGAGG
CATCTGGCTTCCCTTCTCTATCCGGCTGCTCTGCAGGCTCAGCCCTTTCTCTTTCCGTCT
CTTCTTCATCATTTCTCGCTGCTCCTTCTGCTTGTTCTGCACCTCGATGAGCACCGTGAT
GAAGGAGTTCTTCACTTCCTTCTCAAACTCCAGCTCGTCCCGGCGGGCCAGCTGCTGCAC
CAGCTCCTCCGAGAAGTCTCGGATGGCACCCTCCACCTGGTCCAGCAGCTCCGTCAGCTC
GGACCCAGACATGTGCCTCAGTCCTTCATAGGACCAGTTGTTGTCAAAGGTCTGGGTCAA
GGCCTGCATCTCCTGCAGGAGGACGGAGTCCGCCTGGGAGGAGGTCTCTCCCCCATCCTC
CTCTTCCAGAACCTCCTCTTCCTCTTCAGGGTCCGGGGAGTTCTGCATCATCTCCTCAAT
CTCCTCAATCACCTGATCTGCTGTGAGTAGAGGCTCCTCGTTGATACCAGAATCATGTTC
ACTCTTCTCATTGAACTCTTCCTCTTCCTTCTCATGGATCTCAGTGTCAGAGCCATTGCC
ATTCAGAGCCTCCATGTTTGGGTCCCTCCAGTCTTCCGAGAGTGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTATTAATTAAACGAAGGTTTATTTCAAAATTAGTCTTCGGGTATAAGCTGG
TTTTGAGGGCTAGAGCCGGAGTACATCATGAGTGGTGACAGCATCTGCCATCCTCCGCAG
ACATGGGCGGGGAGGAGGCAACCACACCAGCCCTGCCCGTCGGTCATGCATCCAAGGGTT
ACTAGGACTAGAAGCCAACAGCAAAGGACCCCGCGCGCTTGCTCATTTTAATCCGGATTA
AGCTATACACGTTTAAATACACGTCGGAGGCTACGTGGTGTCATGCAGTCCCTGGGGTGG
GATGGCTCTTGCTCAGTGACCTCCACAGCAAGGCTGCTCCCAAGGGCAAGGTTAAGTAGG
ACAGAGCACTTTTAAAATGTAGTCCGTCAGCAAAGTGGGCACCTTCTCATTATCTTCCTT
CATGGCAAAGAGAATGTTGGTCAGCATCTGGAGGTCTTCCACCGACGGGGGCGAGGCCTT
CTTCTCATAAGGGATGACTGTGTTCAGATACTGCTTGTCAGTTCCTGAGGGGCCAAAAGT
CTGGCGGATGCCGCTCTGCAGGATGTTGGAGATGCCTTCCATGCTGAAGCGCTTGAGAGG
CATCTGGCTTCCCTTCTCTATCCGGCTGCTCTGCAGGCTCAGCCCTTTCTCTTTCCGTCT
CTTCTTCATCATTTCTCGCTGCTCCTTCTGCTTGTTCTGCACCTCGATGAGCACCGTGAT
GAAGGAGTTCTTCACTTCCTTCTCAAACTCCAGCTCGTCCCGGCGGGCCAGCTGCTGCAC
CAGCTCCTCCGAGAAGTCTCGGATGGCACCCTCCACCTGGTCCAGCAGCTCCGTCAGCTC
GGACCCAGACATGTGCCTCAGTCCTTCATAGGACCAGTTGTTGTCAAAGGTCTGGGTCAA
GGCCTGCATCTCCTGCAGGAGGACGGAGTCCGCCTGGGAGGAGGTCTCTCCCCCATCCTC
CTCTTCCAGAACCTCCTCTTCCTCTTCAGGGTCCGGGGAGTTCTGCATCATCTCCTCAAT
CTCCTCAATCACCTGATCTGCTGTGAGTAGAGGCTCCTCGTTGATACCAGAATCATGTTC
ACTCTTCTCATTGAACTCTTCCTCTTCCTTCTCATGGATCTCAGTGTCAGAGCCATTGCC
ATTCAGAGCCTCCATGTTTGGGTCCCTCCAGTCTTCCGAGAGTGAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61886281|ref|XP_589148.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886281|ref|XP_589148.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               47-164, + strand, RNAz p=0.89671
               

               
               631-873, - strand, RNAz p=0.948411

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               47-164, + strand, RNAz p=0.89671
               

               
               631-873, - strand, RNAz p=0.948411

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               10-370, gnl|bosTau2|chr29 (22584301-22583943)
               

               
               10-370, gnl|canFam2|chr5 (12045727-12045222)
               

               
               10-370, gnl|dasNov1|scaffold_5806 (10314-10872)
               

               
               10-370, gnl|echTel1|scaffold_303436 (11354-10807)
               

               
               10-370, gnl|hg17|chr11 (124820800-124821323)
               

               
               10-370, gnl|Hg17|chr11 (124820856-124821219)
               

               
               10-370, gnl|loxAfr1|scaffold_4979 (29501-28830)
               

               
               10-370, gnl|mm7|chr9 (36806937-36806445)
               

               
               10-370, gnl|Mm7|chr9 (36806877-36806517)
               

               
               10-370, gnl|monDom2|scaffold_15 (11422489-11422996)
               

               
               10-370, gnl|oryCun1|scaffold_212105 (180694-181187)
               

               
               10-370, gnl|panTro1|chr9 (126906497-126907020)
               

               
               10-370, gnl|rheMac2|chr14 (123599221-123599741)
               

               
               10-370, gnl|rn3|chr8 (38132807-38132313)
               


               
               592-873, gnl|bosTau2|chr29 (22573031-22572750)
               

               
               592-873, gnl|Hg17|chr11 (124830941-124831222)
               

               
               592-873, gnl|Mm7|chr9 (36795782-36795501)
               


               
               599-851, gnl|bosTau2|chr11 (15070323-15070572)
               

               
               599-851, gnl|Hg17|chr2 (36717398-36717647)
               

               
               599-851, gnl|Mm7|chr17 (76696728-76696977)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-370, gnl|bosTau2|chr29 (22584301-22583943)
               

               
               10-370, gnl|canFam2|chr5 (12045727-12045222)
               

               
               10-370, gnl|dasNov1|scaffold_5806 (10314-10872)
               

               
               10-370, gnl|echTel1|scaffold_303436 (11354-10807)
               

               
               10-370, gnl|hg17|chr11 (124820800-124821323)
               

               
               10-370, gnl|Hg17|chr11 (124820856-124821219)
               

               
               10-370, gnl|loxAfr1|scaffold_4979 (29501-28830)
               

               
               10-370, gnl|mm7|chr9 (36806937-36806445)
               

               
               10-370, gnl|Mm7|chr9 (36806877-36806517)
               

               
               10-370, gnl|monDom2|scaffold_15 (11422489-11422996)
               

               
               10-370, gnl|oryCun1|scaffold_212105 (180694-181187)
               

               
               10-370, gnl|panTro1|chr9 (126906497-126907020)
               

               
               10-370, gnl|rheMac2|chr14 (123599221-123599741)
               

               
               10-370, gnl|rn3|chr8 (38132807-38132313)
               


               
               592-873, gnl|bosTau2|chr29 (22573031-22572750)
               

               
               592-873, gnl|Hg17|chr11 (124830941-124831222)
               

               
               592-873, gnl|Mm7|chr9 (36795782-36795501)
               


               
               599-851, gnl|bosTau2|chr11 (15070323-15070572)
               

               
               599-851, gnl|Hg17|chr2 (36717398-36717647)
               

               
               599-851, gnl|Mm7|chr17 (76696728-76696977)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               fbs (0.701385)
               

               
               fce (0.543183)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               ecc (0.23007)
               

               
               nco (0.161734)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.701385)
               

               
               fce (0.543183)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               ecc (0.23007)
               

               
               nco (0.161734)
               

               
               spc (0.113366)

	47-164, + strand, RNAz p=0.89671
	631-873, - strand, RNAz p=0.948411

	10-370, gnl\|bosTau2\|chr29 (22584301-22583943)
	10-370, gnl\|canFam2\|chr5 (12045727-12045222)
	10-370, gnl\|dasNov1\|scaffold_5806 (10314-10872)
	10-370, gnl\|echTel1\|scaffold_303436 (11354-10807)
	10-370, gnl\|hg17\|chr11 (124820800-124821323)
	10-370, gnl\|Hg17\|chr11 (124820856-124821219)
	10-370, gnl\|loxAfr1\|scaffold_4979 (29501-28830)
	10-370, gnl\|mm7\|chr9 (36806937-36806445)
	10-370, gnl\|Mm7\|chr9 (36806877-36806517)
	10-370, gnl\|monDom2\|scaffold_15 (11422489-11422996)
	10-370, gnl\|oryCun1\|scaffold_212105 (180694-181187)
	10-370, gnl\|panTro1\|chr9 (126906497-126907020)
	10-370, gnl\|rheMac2\|chr14 (123599221-123599741)
	10-370, gnl\|rn3\|chr8 (38132807-38132313)

	592-873, gnl\|bosTau2\|chr29 (22573031-22572750)
	592-873, gnl\|Hg17\|chr11 (124830941-124831222)
	592-873, gnl\|Mm7\|chr9 (36795782-36795501)

	599-851, gnl\|bosTau2\|chr11 (15070323-15070572)
	599-851, gnl\|Hg17\|chr2 (36717398-36717647)
	599-851, gnl\|Mm7\|chr17 (76696728-76696977)

	fbs (0.701385)
	fce (0.543183)
	ebs (0.354904)
	fhi (0.339155)
	hyp (0.285673)
	ecc (0.23007)
	nco (0.161734)
	spc (0.113366)