Non-Coding RNA Search

Ss1.1-rhyp33c_f15.5

Sequence:


               
               AAGAGATCTCGGGGGTCAGTCAGCCTCCTACCGCCGTTGCCTGCCCCAGATCCAGCTCTA
TGGCCCCACCAACGTGGCCCCCATCATCAACCGAGTGGCTGGCCCAGCCCAGCGGGAGCA
TAGCACTGGCCATGCCACGAAGTACTCTGTGTTGCTGGTGCTCACAGACGGAGTGGGGAG
TGACATGGCCGAGACCCGCGCCGCCATCGTGCGGGCCTCCCACCTGCCCATGTCCATCAT
CATCGTGGGCGTGGGCAATGCCGACTTCTCGGACATGCGGCTGCTGGACGGTGACGACGG
TCCCTTGCGTTGCCCCCGAGGGGTGCCCGCGGCTCGCGACATCGTGCAGGTCGTGCCCTT
CCAGGACTTCAAGGATGCCCCACCCTGTGCGCTCGCTAAGTGTGTCCTGGCCGATGTGCC
ACGGCAGGTGGTGGAGTACTACGCAAGCCAGGGCATCAGCCCCGGGGCTCCCACGCCCTG
CACGCCGGCCACGACCCCCAGCCCTAGCCCGTGACCACCACCCACCGGACCGCCACTCCC
TCCAGCCTCTCAGTGCCTGTCCTGACCCTTGTGACTCAAGTGACCAGTGCCTCTCCCTCT
TGGACCAGTTGTGCCCCTGGGTCCTGGAAGTCAGTGGTGAGCCCTGCCCCATCTCTCCAG
GTCCCATACTCCTCAGCCTCGGTGGTCCCTCAGTGACTTTCTTCAGTGATCCTGACTTTC
TGGCCATTAATAAAGGGAACCATTCCTAGCAAAAAAAAAAAAAGAGGGGGGGCCGTTTAA
AATTTCCCTTGGGGGGGCCAAATTTACCCCTCCCCCTTTTTTTTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGATCTCGGGGGTCAGTCAGCCTCCTACCGCCGTTGCCTGCCCCAGATCCAGCTCTA
TGGCCCCACCAACGTGGCCCCCATCATCAACCGAGTGGCTGGCCCAGCCCAGCGGGAGCA
TAGCACTGGCCATGCCACGAAGTACTCTGTGTTGCTGGTGCTCACAGACGGAGTGGGGAG
TGACATGGCCGAGACCCGCGCCGCCATCGTGCGGGCCTCCCACCTGCCCATGTCCATCAT
CATCGTGGGCGTGGGCAATGCCGACTTCTCGGACATGCGGCTGCTGGACGGTGACGACGG
TCCCTTGCGTTGCCCCCGAGGGGTGCCCGCGGCTCGCGACATCGTGCAGGTCGTGCCCTT
CCAGGACTTCAAGGATGCCCCACCCTGTGCGCTCGCTAAGTGTGTCCTGGCCGATGTGCC
ACGGCAGGTGGTGGAGTACTACGCAAGCCAGGGCATCAGCCCCGGGGCTCCCACGCCCTG
CACGCCGGCCACGACCCCCAGCCCTAGCCCGTGACCACCACCCACCGGACCGCCACTCCC
TCCAGCCTCTCAGTGCCTGTCCTGACCCTTGTGACTCAAGTGACCAGTGCCTCTCCCTCT
TGGACCAGTTGTGCCCCTGGGTCCTGGAAGTCAGTGGTGAGCCCTGCCCCATCTCTCCAG
GTCCCATACTCCTCAGCCTCGGTGGTCCCTCAGTGACTTTCTTCAGTGATCCTGACTTTC
TGGCCATTAATAAAGGGAACCATTCCTAGCAAAAAAAAAAAAAGAGGGGGGGCCGTTTAA
AATTTCCCTTGGGGGGGCCAAATTTACCCCTCCCCCTTTTTTTTGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61861352|ref|XP_615230.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61861352|ref|XP_615230.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               139-377, gnl|bosTau2|chr10 (12421708-12421470)
               

               
               139-377, gnl|Hg17|chr14 (23616202-23616440)
               

               
               139-377, gnl|Mm7|chr14 (50383395-50383633)
               


               
               553-751, gnl|bosTau2|chr10 (12420993-12420796)
               

               
               553-751, gnl|Hg17|chr14 (23616937-23617136)
               

               
               553-751, gnl|Mm7|chr14 (50384101-50384300)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-377, gnl|bosTau2|chr10 (12421708-12421470)
               

               
               139-377, gnl|Hg17|chr14 (23616202-23616440)
               

               
               139-377, gnl|Mm7|chr14 (50383395-50383633)
               


               
               553-751, gnl|bosTau2|chr10 (12420993-12420796)
               

               
               553-751, gnl|Hg17|chr14 (23616937-23617136)
               

               
               553-751, gnl|Mm7|chr14 (50384101-50384300)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               hyp (0.142837)

	139-377, gnl\|bosTau2\|chr10 (12421708-12421470)
	139-377, gnl\|Hg17\|chr14 (23616202-23616440)
	139-377, gnl\|Mm7\|chr14 (50383395-50383633)

	553-751, gnl\|bosTau2\|chr10 (12420993-12420796)
	553-751, gnl\|Hg17\|chr14 (23616937-23617136)
	553-751, gnl\|Mm7\|chr14 (50384101-50384300)