Non-Coding RNA Search

Ss1.1-rhyp33c_j15.5

Sequence:


               
               CAAAGTGAAAGAAGTCCTCTTCCAGCACGGTGGCTTCCAGCAGAGTTGAACCCGGGATTC
CGTCACACATGTCCCTCCGCACTCAGCATGTTTTCAGGCCAAGTTGGTGAAGAAGGTGGC
CTTTGACAAAATGGGGTGAAGACTCCCTGCATTTGCTGAACAGGGATCTGACCTGACCCA
GGTTAAACTAAACCAAAGGCCCAGGTCCCAACTTCTTTCAACCAGGAGCCACCTGCTTTC
TGGAGTTCTTCTCCAGCTTTTCCTGGGATGGGCGCAGCAAGTCCGAGGAGCAAGCTGCGG
TATTGTGCCTGTGCTTCGGGAAGGGGACTTAGGAGTGACTGAGAAATCTTGATCCTCCAT
GGCGCCCAGGAACTGCTTTTAGAAAGAGCCACGGCTGGTGATCCCCAGGCCTTTGGAGCT
TCAGCTCTTTGGTGGGTACAGGGAAGCCTATGAATTGGCGGGACCATGCTGTGAGAGGAG
TACTGAGAATAAAGAAAAGTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGTGAAAGAAGTCCTCTTCCAGCACGGTGGCTTCCAGCAGAGTTGAACCCGGGATTC
CGTCACACATGTCCCTCCGCACTCAGCATGTTTTCAGGCCAAGTTGGTGAAGAAGGTGGC
CTTTGACAAAATGGGGTGAAGACTCCCTGCATTTGCTGAACAGGGATCTGACCTGACCCA
GGTTAAACTAAACCAAAGGCCCAGGTCCCAACTTCTTTCAACCAGGAGCCACCTGCTTTC
TGGAGTTCTTCTCCAGCTTTTCCTGGGATGGGCGCAGCAAGTCCGAGGAGCAAGCTGCGG
TATTGTGCCTGTGCTTCGGGAAGGGGACTTAGGAGTGACTGAGAAATCTTGATCCTCCAT
GGCGCCCAGGAACTGCTTTTAGAAAGAGCCACGGCTGGTGATCCCCAGGCCTTTGGAGCT
TCAGCTCTTTGGTGGGTACAGGGAAGCCTATGAATTGGCGGGACCATGCTGTGAGAGGAG
TACTGAGAATAAAGAAAAGTGACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               162-464, gnl|bosTau2|chr21 (22404752-22404436)
               

               
               162-464, gnl|Hg17|chr15 (73128760-73129068)
               

               
               162-464, gnl|Mm7|chr9 (57442173-57441703)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               162-464, gnl|bosTau2|chr21 (22404752-22404436)
               

               
               162-464, gnl|Hg17|chr15 (73128760-73129068)
               

               
               162-464, gnl|Mm7|chr9 (57442173-57441703)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cje (0.165235)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)

	162-464, gnl\|bosTau2\|chr21 (22404752-22404436)
	162-464, gnl\|Hg17\|chr15 (73128760-73129068)
	162-464, gnl\|Mm7\|chr9 (57442173-57441703)