Non-Coding RNA Search

Ss1.1-rhyp33c_k2.5

Sequence:


               
               ACATCTGAAATAAGGCACAAAATGGTGGCCTCGTATCTGGCTCTCCTGCGAGCGACGAGA
CTTTACCAAGTGGGCCATACGAGCTGCGGACGGTTGGTAGGGCTTCCAAAACTAAGGACC
GCTAACCCAATCTCTTGGACCCCATTCCGGATGGCGGCGACCGTGACGCTGGAGCCCGCG
GGCCGTTGCTGCTGGGACGAGCCGGTGCGCATCGCTGTGCGCGGCCTGGCCCCAGAGCAG
CCGGTCACGCTGCGCGCGTCCCTGCGCGACGAGAAGGGCGCGCTCTTCAGGGCCCACGCG
CGCTACTGCGCCGACACCGACGGCCAGCTGGACCTGGCGCGCGCGCCCGCGCTGGGCGGC
AGCTTCGTGGGGCTCGAGCCCATGGGGCTCTTCTGGGCTCTGGAGCCCGAGAAGCCTTTG
CTACGGCTGGTGAAGCGGGACGTGCAGACGCCCTTCGCCGTGGAGCTGGAGGTGTTCGAC
GGCCACGAGCCCGAGGGCGGGCGGCTCCTGGGCCGGGCTGTGCACGAGCGCGACTTCCTG
CCGCCCGGGGTTCGGCGCGAGCCGGTGCGCGCGGGCCGGGTGCGCGCCACGCTTTTCCTG
CCTCCAGAACCTGGCCCCTTTCCTGGGATCGTGGACCTTTTTGGAGCTGGAGGGGGCCTT
CCAGAATACCGAGCCAGTCTGCTGGCTGGAAAGGGTTTTGCTGTGATGGCGCTGGCTTAT
CATAACTACGAAGACCTCCCCAAAGGCATAGAGAATGTCCACCTGGAGTACTTTGAAGAA
GCTGTGAACTACTTGCTTAGTCACCCTCAGGTGAAGGGTCCAGGAGTCGGGCTGCTTGGG
ATTTCCAAAGGCGGTGAACTCTGCCTCTCCGTGGCCTCCTTCCTGAAGAGCATCACCGCC
ACCGTGGTAATCAATGCCTCTGTGGCCAACATCGGGGGAACCTTGCACTACAAGGGTGAG
ACCCTGCCCCCTCTGGGCACCAACCCAAGTCGAATCAAAGTGACCAAAGATGGCGTTGCA
GACATTTTGCATGTCCTCAACAGCCCTTTGGAGGGACCTGACCAGAAGAGTTTCATTCCT
GTGGAAAGGGCTGAGAGTGCCTTCCTGTTCCTTGTGGGTCAGGATGACCACAACTGGAAG
AGTGAGTTCTATGCTAATGAGGCCTCTAAGCGCTTGCAGGCCCATGGGAAGGAGAAGCCC
CAGATCATCTGCTACCCAAGGGCGGGACACTATATTGAGCCTCCTTACTTCCCCCTGTGC
CGGGCTTCTCTGCACGTCTTGGTGGGCCGCCCTGTCATCTGGGGAGGGGAGCCCAGGGCT
CATGCCATGGCCCAGGTGGATGCCTGGCAGCAGCTCCAGACTTTCTTCCACAAACACTTG
GGCGGGGAGAAGGGGACTATCCCAACAAAACTGTGATTGGGTCACATCTGATTGGGTGGC
ATCCTTGATGCTAATCTCTCCTGGGAACAGCTGCCAGAAGTTGTGTGTCCGTGTGTGTAG
TTTTTTTTCTCTTCAATAATTACTTAAGAGTTCTTCCCCCTTCACTGTTAGAGTGAACAT
ACCAAGAAGTTTTCAAGATTTTTATAATTACATACTTTTTCAGTTGTTTGAGGGGAGAGT
GATGCTCTAGAAAACATAAGAGATGGAGAAAGCATACCTTTTAGTATCTAACAACATCCA
CCTGACAAAGCTATAGCCCTGAAAGGAAAAGAGCAATACCTGACTAACAGTGCCTGGTAC
ACGACTGCTGCTCAGTAGCAATTTGTTGTGTTACTTATTATTATGTTTGAATATGTATAA
TAACTAATAAATGTTATCTACTGTGGAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATCTGAAATAAGGCACAAAATGGTGGCCTCGTATCTGGCTCTCCTGCGAGCGACGAGA
CTTTACCAAGTGGGCCATACGAGCTGCGGACGGTTGGTAGGGCTTCCAAAACTAAGGACC
GCTAACCCAATCTCTTGGACCCCATTCCGGATGGCGGCGACCGTGACGCTGGAGCCCGCG
GGCCGTTGCTGCTGGGACGAGCCGGTGCGCATCGCTGTGCGCGGCCTGGCCCCAGAGCAG
CCGGTCACGCTGCGCGCGTCCCTGCGCGACGAGAAGGGCGCGCTCTTCAGGGCCCACGCG
CGCTACTGCGCCGACACCGACGGCCAGCTGGACCTGGCGCGCGCGCCCGCGCTGGGCGGC
AGCTTCGTGGGGCTCGAGCCCATGGGGCTCTTCTGGGCTCTGGAGCCCGAGAAGCCTTTG
CTACGGCTGGTGAAGCGGGACGTGCAGACGCCCTTCGCCGTGGAGCTGGAGGTGTTCGAC
GGCCACGAGCCCGAGGGCGGGCGGCTCCTGGGCCGGGCTGTGCACGAGCGCGACTTCCTG
CCGCCCGGGGTTCGGCGCGAGCCGGTGCGCGCGGGCCGGGTGCGCGCCACGCTTTTCCTG
CCTCCAGAACCTGGCCCCTTTCCTGGGATCGTGGACCTTTTTGGAGCTGGAGGGGGCCTT
CCAGAATACCGAGCCAGTCTGCTGGCTGGAAAGGGTTTTGCTGTGATGGCGCTGGCTTAT
CATAACTACGAAGACCTCCCCAAAGGCATAGAGAATGTCCACCTGGAGTACTTTGAAGAA
GCTGTGAACTACTTGCTTAGTCACCCTCAGGTGAAGGGTCCAGGAGTCGGGCTGCTTGGG
ATTTCCAAAGGCGGTGAACTCTGCCTCTCCGTGGCCTCCTTCCTGAAGAGCATCACCGCC
ACCGTGGTAATCAATGCCTCTGTGGCCAACATCGGGGGAACCTTGCACTACAAGGGTGAG
ACCCTGCCCCCTCTGGGCACCAACCCAAGTCGAATCAAAGTGACCAAAGATGGCGTTGCA
GACATTTTGCATGTCCTCAACAGCCCTTTGGAGGGACCTGACCAGAAGAGTTTCATTCCT
GTGGAAAGGGCTGAGAGTGCCTTCCTGTTCCTTGTGGGTCAGGATGACCACAACTGGAAG
AGTGAGTTCTATGCTAATGAGGCCTCTAAGCGCTTGCAGGCCCATGGGAAGGAGAAGCCC
CAGATCATCTGCTACCCAAGGGCGGGACACTATATTGAGCCTCCTTACTTCCCCCTGTGC
CGGGCTTCTCTGCACGTCTTGGTGGGCCGCCCTGTCATCTGGGGAGGGGAGCCCAGGGCT
CATGCCATGGCCCAGGTGGATGCCTGGCAGCAGCTCCAGACTTTCTTCCACAAACACTTG
GGCGGGGAGAAGGGGACTATCCCAACAAAACTGTGATTGGGTCACATCTGATTGGGTGGC
ATCCTTGATGCTAATCTCTCCTGGGAACAGCTGCCAGAAGTTGTGTGTCCGTGTGTGTAG
TTTTTTTTCTCTTCAATAATTACTTAAGAGTTCTTCCCCCTTCACTGTTAGAGTGAACAT
ACCAAGAAGTTTTCAAGATTTTTATAATTACATACTTTTTCAGTTGTTTGAGGGGAGAGT
GATGCTCTAGAAAACATAAGAGATGGAGAAAGCATACCTTTTAGTATCTAACAACATCCA
CCTGACAAAGCTATAGCCCTGAAAGGAAAAGAGCAATACCTGACTAACAGTGCCTGGTAC
ACGACTGCTGCTCAGTAGCAATTTGTTGTGTTACTTATTATTATGTTTGAATATGTATAA
TAACTAATAAATGTTATCTACTGTGGAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CTE1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CTE1_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               360-479, - strand, RNAz p=0.538868
               

               
               1005-1124, - strand, RNAz p=0.971306
               

               
               1245-1417, + strand, RNAz p=0.897645

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-479, - strand, RNAz p=0.538868
               

               
               1005-1124, - strand, RNAz p=0.971306
               

               
               1245-1417, + strand, RNAz p=0.897645

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006821, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006821, +

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               3-607, gnl|bosTau2|chr10 (60132660-60133263)
               

               
               3-607, gnl|Hg17|chr14 (73073785-73074335)
               

               
               3-607, gnl|Mm7|chr12 (81983920-81984518)
               


               
               806-1417, gnl|bosTau2|chr10 (60148680-60149291)
               

               
               806-1417, gnl|Hg17|chr14 (73111360-73111982)
               

               
               806-1417, gnl|Mm7|chr12 (82012812-82013388)
               


               
               1441-1722, gnl|bosTau2|chr10 (60139503-60139769)
               

               
               1441-1722, gnl|Hg17|chr14 (73080112-73080421)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-607, gnl|bosTau2|chr10 (60132660-60133263)
               

               
               3-607, gnl|Hg17|chr14 (73073785-73074335)
               

               
               3-607, gnl|Mm7|chr12 (81983920-81984518)
               


               
               806-1417, gnl|bosTau2|chr10 (60148680-60149291)
               

               
               806-1417, gnl|Hg17|chr14 (73111360-73111982)
               

               
               806-1417, gnl|Mm7|chr12 (82012812-82013388)
               


               
               1441-1722, gnl|bosTau2|chr10 (60139503-60139769)
               

               
               1441-1722, gnl|Hg17|chr14 (73080112-73080421)

Expressed library(ies): 38 entry(ies)

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Expressed library(ies): 38 entry(ies)

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               hea (0.613497)
               

               
               nje (0.49776)
               

               
               ski (0.440205)
               

               
               cov (0.396458)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.613497)
               

               
               nje (0.49776)
               

               
               ski (0.440205)
               

               
               cov (0.396458)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	360-479, - strand, RNAz p=0.538868
	1005-1124, - strand, RNAz p=0.971306
	1245-1417, + strand, RNAz p=0.897645

	3-607, gnl\|bosTau2\|chr10 (60132660-60133263)
	3-607, gnl\|Hg17\|chr14 (73073785-73074335)
	3-607, gnl\|Mm7\|chr12 (81983920-81984518)

	806-1417, gnl\|bosTau2\|chr10 (60148680-60149291)
	806-1417, gnl\|Hg17\|chr14 (73111360-73111982)
	806-1417, gnl\|Mm7\|chr12 (82012812-82013388)

	1441-1722, gnl\|bosTau2\|chr10 (60139503-60139769)
	1441-1722, gnl\|Hg17\|chr14 (73080112-73080421)

	hea (0.613497)
	nje (0.49776)
	ski (0.440205)
	cov (0.396458)
	sme (0.305437)
	fat (0.294855)
	hyp (0.285673)
	fce (0.271592)
	ssp (0.271039)
	eru (0.240096)
	nms (0.213858)
	mas (0.210305)
	jej (0.197844)
	eje (0.197668)
	gul (0.177588)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	eye (0.170503)
	cut (0.169924)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	fco (0.157208)
	lun (0.150489)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)