Non-Coding RNA Search

Ss1.1-rhyp33c_l18.5

Sequence:


               
               AGAACAACATTCTGCCACATTAGGGCTGTCAGGCCATCGGTCTCGTTATCTGCTAGATAG
TAGATTTTTCTTGGACTGAGAAGAGAAGGCATGCTGTATATGAACTGTAGTAGGCAGTGT
TTGTTTTTATCCTGTAGCGAGTTTTCCACAGCCCTGGGCTACAACTCATAAATATGCAGC
ATATGTGTTGTTCGGTAGGAGTTGCTATAGGTTAGGTAGAGTAAATATTTTGTATTTTTC
CACAGTGTCTTTTCCTTGGTTTGGATTACCTGCATTAAGTATAATGACTGTTGTTGCCAA
GGCACACTTGACTCTGAACAAGAAATCTTAACAAAGAAGAACTTGTGATGACTGCTCTAC
CTACTTGAATCCCTAGGCTTTGGGCTATGGTACATACTACATTTGCATCCAAACTAGCAG
CAACTCAGAATGAAATCTTTTTCAGCAAGGAAGATCTCTTAGTGCATTAGGCGTCTATAG
AGATTTGTATGTACCTTGCATTATGTACTTGAGTCTCCTGGTTTTATTATTTTTCCCCTT
CCCTTTTGTTCTCATTCTTGGCGAAGAATAATGCATTAAATTGACTCTTGGTCTTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACAACATTCTGCCACATTAGGGCTGTCAGGCCATCGGTCTCGTTATCTGCTAGATAG
TAGATTTTTCTTGGACTGAGAAGAGAAGGCATGCTGTATATGAACTGTAGTAGGCAGTGT
TTGTTTTTATCCTGTAGCGAGTTTTCCACAGCCCTGGGCTACAACTCATAAATATGCAGC
ATATGTGTTGTTCGGTAGGAGTTGCTATAGGTTAGGTAGAGTAAATATTTTGTATTTTTC
CACAGTGTCTTTTCCTTGGTTTGGATTACCTGCATTAAGTATAATGACTGTTGTTGCCAA
GGCACACTTGACTCTGAACAAGAAATCTTAACAAAGAAGAACTTGTGATGACTGCTCTAC
CTACTTGAATCCCTAGGCTTTGGGCTATGGTACATACTACATTTGCATCCAAACTAGCAG
CAACTCAGAATGAAATCTTTTTCAGCAAGGAAGATCTCTTAGTGCATTAGGCGTCTATAG
AGATTTGTATGTACCTTGCATTATGTACTTGAGTCTCCTGGTTTTATTATTTTTCCCCTT
CCCTTTTGTTCTCATTCTTGGCGAAGAATAATGCATTAAATTGACTCTTGGTCTTAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-571, gnl|bosTau2|chr10 (48322564-48323133)
               

               
               1-571, gnl|Hg17|chr14 (57541132-57540567)
               

               
               1-571, gnl|Mm7|chr14 (45016151-45015603)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-571, gnl|bosTau2|chr10 (48322564-48323133)
               

               
               1-571, gnl|Hg17|chr14 (57541132-57540567)
               

               
               1-571, gnl|Mm7|chr14 (45016151-45015603)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               elu (0.385356)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	1-571, gnl\|bosTau2\|chr10 (48322564-48323133)
	1-571, gnl\|Hg17\|chr14 (57541132-57540567)
	1-571, gnl\|Mm7\|chr14 (45016151-45015603)

	elu (0.385356)
	ova (0.258264)
	tes (0.207814)
	fat (0.147427)
	hyp (0.142837)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)