Ss1.1-rhyp33c_p20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGAATTGCAGAAGTAGGAGGTGTGCCTTACCTACTGCCTCTTGTAAATAAAAAAAAAGT TTATGATCTAAATAAGATTGCAAAAGAAATTCAGCTTCCTGGAGCTTTTATTCTTGGGGC AGGAGCAGGCCCGTTTCAGACTCTGGGATTCAGTTCTGAGTTTATGCCAGTTATTCAAAC AGAATGTGAACACAAACCTCCTGTGAATGGAAGTTACTTTGCTCGTGTTAACCCTGAAGA TGGAGGGTGCCTACTAGAGAAATACAGTGAGAAATACCATGATTTTGGGTGTGCATTACT GGCTAATCTTTTCGCCAGTGAGGGCCAACCTGGAAAGGTCATTGAGGTAAAAGCCAAAAG AAGAACTGGAGATCTTAACTTTGTGACTTGTATGAGACAGACTCTTGAAAACCATTATGG AGATAAGCCTGTAGGGATGGGAGGTACTTTCATAATTCAGAAGGGAAAAGTGAAGACTCA CATTATGCCTGCAGAATTTTCTGTCTGCCCCTTGAACTCTGATGAAGAGGTGAATAACTG GTTGCGTTTTTATGAGATGAAGGCTCCTTTGGTTTGTTTGCCAGTTTTTGTCTCCAGGGA CCCAGGGTTTGATTTGCGGTTGGAGCACACTCATTGTTTCAGTCACCATGGAGAAGGTGG ACACTACCACTATGACACCACCCCAGATACAGTGGAATATCTTGGATACTTCTTACCTGC AGAGTTTCTCTATCGCATTGATCAACCAAAAGAGACCCATTTATTTGGGCGAGATTAAAT CAACTAATACTCATTTAGAAGAAGAAATAATTAACTAAGGTTAATTGATTGATTACCTCA TTGATACTAATATAAAATTCAATAGAAATGATCTATCTCACTACTTGCGCCCTATTTCTT AGGGCCGCTCCCATGGCATGTGGAGGTTCCCAGGCTAGGGGTCCAGTTGGAGCCGTAGCC ACCAGTCTATGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGAATTGCAGAAGTAGGAGGTGTGCCTTACCTACTGCCTCTTGTAAATAAAAAAAAAGT TTATGATCTAAATAAGATTGCAAAAGAAATTCAGCTTCCTGGAGCTTTTATTCTTGGGGC AGGAGCAGGCCCGTTTCAGACTCTGGGATTCAGTTCTGAGTTTATGCCAGTTATTCAAAC AGAATGTGAACACAAACCTCCTGTGAATGGAAGTTACTTTGCTCGTGTTAACCCTGAAGA TGGAGGGTGCCTACTAGAGAAATACAGTGAGAAATACCATGATTTTGGGTGTGCATTACT GGCTAATCTTTTCGCCAGTGAGGGCCAACCTGGAAAGGTCATTGAGGTAAAAGCCAAAAG AAGAACTGGAGATCTTAACTTTGTGACTTGTATGAGACAGACTCTTGAAAACCATTATGG AGATAAGCCTGTAGGGATGGGAGGTACTTTCATAATTCAGAAGGGAAAAGTGAAGACTCA CATTATGCCTGCAGAATTTTCTGTCTGCCCCTTGAACTCTGATGAAGAGGTGAATAACTG GTTGCGTTTTTATGAGATGAAGGCTCCTTTGGTTTGTTTGCCAGTTTTTGTCTCCAGGGA CCCAGGGTTTGATTTGCGGTTGGAGCACACTCATTGTTTCAGTCACCATGGAGAAGGTGG ACACTACCACTATGACACCACCCCAGATACAGTGGAATATCTTGGATACTTCTTACCTGC AGAGTTTCTCTATCGCATTGATCAACCAAAAGAGACCCATTTATTTGGGCGAGATTAAAT CAACTAATACTCATTTAGAAGAAGAAATAATTAACTAAGGTTAATTGATTGATTACCTCA TTGATACTAATATAAAATTCAATAGAAATGATCTATCTCACTACTTGCGCCCTATTTCTT AGGGCCGCTCCCATGGCATGTGGAGGTTCCCAGGCTAGGGGTCCAGTTGGAGCCGTAGCC ACCAGTCTATGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 226-343, + strand, RNAz p=0.850163 | |
| 791-906, + strand, RNAz p=0.547743 | |
| 800-906, - strand, RNAz p=0.889168 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 226-343, + strand, RNAz p=0.850163 | |
| 791-906, + strand, RNAz p=0.547743 | |
| 800-906, - strand, RNAz p=0.889168 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 154-343, gnl|bosTau2|chr29 (572768-572957) | |
| 154-343, gnl|Hg17|chr11 (93128017-93128206) | |
| 154-343, gnl|Mm7|chr9 (15130789-15130600) | |
| 487-603, gnl|bosTau2|chr29 (579641-579757) | |
| 487-603, gnl|Hg17|chr11 (93132555-93132671) | |
| 487-603, gnl|Mm7|chr9 (15126079-15125963) | |
| 605-906, gnl|bosTau2|chr29 (580559-580860) | |
| 605-906, gnl|canFam2|chr21 (9992932-9992726) | |
| 605-906, gnl|danRer3|chr5 (69159180-69159002) | |
| 605-906, gnl|echTel1|scaffold_292819 (6548-6774) | |
| 605-906, gnl|fr1|chrUn (198187458-198187655) | |
| 605-906, gnl|galGal2|chr1 (177601874-177601691) | |
| 605-906, gnl|hg17|chr11 (93134328-93134542) | |
| 605-906, gnl|Hg17|chr11 (93134329-93134609) | |
| 605-906, gnl|mm7|chr9 (15123600-15123398) | |
| 605-906, gnl|monDom2|scaffold_15 (4085944-4085725) | |
| 605-906, gnl|oryCun1|scaffold_211021 (3137-3353) | |
| 605-906, gnl|panTro1|chr9 (95036656-95036870) | |
| 605-906, gnl|rheMac2|chr14 (92322903-92323117) | |
| 605-906, gnl|rn3|chr8 (12086484-12086267) | |
| 605-906, gnl|tetNig1|chr7 (2290870-2291046) | |
| 605-906, gnl|xenTro1|scaffold_21 (3266312-3266488) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 154-343, gnl|bosTau2|chr29 (572768-572957) | |
| 154-343, gnl|Hg17|chr11 (93128017-93128206) | |
| 154-343, gnl|Mm7|chr9 (15130789-15130600) | |
| 487-603, gnl|bosTau2|chr29 (579641-579757) | |
| 487-603, gnl|Hg17|chr11 (93132555-93132671) | |
| 487-603, gnl|Mm7|chr9 (15126079-15125963) | |
| 605-906, gnl|bosTau2|chr29 (580559-580860) | |
| 605-906, gnl|canFam2|chr21 (9992932-9992726) | |
| 605-906, gnl|danRer3|chr5 (69159180-69159002) | |
| 605-906, gnl|echTel1|scaffold_292819 (6548-6774) | |
| 605-906, gnl|fr1|chrUn (198187458-198187655) | |
| 605-906, gnl|galGal2|chr1 (177601874-177601691) | |
| 605-906, gnl|hg17|chr11 (93134328-93134542) | |
| 605-906, gnl|Hg17|chr11 (93134329-93134609) | |
| 605-906, gnl|mm7|chr9 (15123600-15123398) | |
| 605-906, gnl|monDom2|scaffold_15 (4085944-4085725) | |
| 605-906, gnl|oryCun1|scaffold_211021 (3137-3353) | |
| 605-906, gnl|panTro1|chr9 (95036656-95036870) | |
| 605-906, gnl|rheMac2|chr14 (92322903-92323117) | |
| 605-906, gnl|rn3|chr8 (12086484-12086267) | |
| 605-906, gnl|tetNig1|chr7 (2290870-2291046) | |
| 605-906, gnl|xenTro1|scaffold_21 (3266312-3266488) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nco (0.161734) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| kid (0.129735) | |
| sug (0.127291) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| kid (0.129735) | |
| sug (0.127291) |