Ss1.1-ri11320b_m3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAGACCCCAAGGGAGCTACTCTTTGTCCGTGCGAGACTACGACCCCCAGCACAGGGAC ACGGTGAAGCATTACAAGATCCGGACCCTGGGACAGCGGGGGCTTCTACATCTCCCCACG GACACTTTCAACACCCTGCAGGAGCTGGTGGCCCACTACAAGAAGGGGAGCGACGGGCTT TGCCAGAAGCTGACCGTGCCCTGCGTGTCCTCCAAGCCCCAGAAGCCTTGGGAGAAAGAT GCCTGGGAGATCCCCCGGGAGTCCCTCAAGATGGAGAAGAGACTTGGAGCGGGGCAGTTT GGGGAAGTCTGGCTGGCCACCTACAACAAGCACACCAAGGTGGCCGTGAAGACCATGAAG CCCGGGAGCATGTCTGTGGAGGCCTTCCTGGCAGAAGCCAACCTGATGAAAACTCTGCAG CACGACAAGCTGGTGAAGCTGCACGCGGTGGTCACCACGGAAGAGCCCATCTACATCATC ACGGAGTTCATGGCCAAAGGCAGCCTGCTTGACTTCCTGAAAAGTGAAGAAGGCAGCAAG CAGCCTTTGCAAAAACTCATCGACTTCTCGGCCCAGATTGCAGAAGGCATGGCCTTCATC GAGCAGAGGAACTACATCCACCGTGACCTCCGAGCCGCCAACATCTTGGTGTCTGGGTCC CTGGTGTGCAAGATTGCTGACTTCGGCCTGGCCCGGGTCATCGAGGACAATGAATACACA GCTCGGGAAGGGGCCAAGTTCCCCATCAAATGGACAGCTCCTGAAGCCATCAACTTCGGC TCATTTACCATCAAGTCAGACGTCTGGTCCTTTGGTATCCTGCTGACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAGACCCCAAGGGAGCTACTCTTTGTCCGTGCGAGACTACGACCCCCAGCACAGGGAC ACGGTGAAGCATTACAAGATCCGGACCCTGGGACAGCGGGGGCTTCTACATCTCCCCACG GACACTTTCAACACCCTGCAGGAGCTGGTGGCCCACTACAAGAAGGGGAGCGACGGGCTT TGCCAGAAGCTGACCGTGCCCTGCGTGTCCTCCAAGCCCCAGAAGCCTTGGGAGAAAGAT GCCTGGGAGATCCCCCGGGAGTCCCTCAAGATGGAGAAGAGACTTGGAGCGGGGCAGTTT GGGGAAGTCTGGCTGGCCACCTACAACAAGCACACCAAGGTGGCCGTGAAGACCATGAAG CCCGGGAGCATGTCTGTGGAGGCCTTCCTGGCAGAAGCCAACCTGATGAAAACTCTGCAG CACGACAAGCTGGTGAAGCTGCACGCGGTGGTCACCACGGAAGAGCCCATCTACATCATC ACGGAGTTCATGGCCAAAGGCAGCCTGCTTGACTTCCTGAAAAGTGAAGAAGGCAGCAAG CAGCCTTTGCAAAAACTCATCGACTTCTCGGCCCAGATTGCAGAAGGCATGGCCTTCATC GAGCAGAGGAACTACATCCACCGTGACCTCCGAGCCGCCAACATCTTGGTGTCTGGGTCC CTGGTGTGCAAGATTGCTGACTTCGGCCTGGCCCGGGTCATCGAGGACAATGAATACACA GCTCGGGAAGGGGCCAAGTTCCCCATCAAATGGACAGCTCCTGAAGCCATCAACTTCGGC TCATTTACCATCAAGTCAGACGTCTGGTCCTTTGGTATCCTGCTGACG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 176-316, gnl|bosTau2|chr14 (11727436-11727295) | |
| 176-316, gnl|canFam2|chr29 (10400662-10400860) | |
| 176-316, gnl|danRer3|chr21 (27006085-27005926) | |
| 176-316, gnl|dasNov1|scaffold_52978 (4083-3889) | |
| 176-316, gnl|echTel1|scaffold_321073 (42685-42838) | |
| 176-316, gnl|fr1|chrUn (272061339-272061161) | |
| 176-316, gnl|galGal2|chr2 (110373090-110373282) | |
| 176-316, gnl|hg17|chr8 (57028909-57029107) | |
| 176-316, gnl|Hg17|chr8 (57028956-57029097) | |
| 176-316, gnl|loxAfr1|scaffold_96941 (3147-2950) | |
| 176-316, gnl|mm7|chr4 (3675773-3675970) | |
| 176-316, gnl|Mm7|chr4 (3675819-3675960) | |
| 176-316, gnl|monDom2|scaffold_4 (108115387-108115210) | |
| 176-316, gnl|oryCun1|scaffold_199689 (156130-156317) | |
| 176-316, gnl|panTro1|chr7 (58737008-58737206) | |
| 176-316, gnl|rheMac2|chr8 (58560379-58560577) | |
| 176-316, gnl|rn3|chr5 (17013638-17013833) | |
| 176-316, gnl|tetNig1|chrUn_random (16184270-16184426) | |
| 176-316, gnl|xenTro1|scaffold_8 (2692411-2692599) | |
| 319-500, gnl|bosTau2|chr13 (49329151-49328973) | |
| 319-500, gnl|canFam2|chr24 (28985795-28986007) | |
| 319-500, gnl|danRer3|chr18 (19394224-19394034) | |
| 319-500, gnl|dasNov1|scaffold_170364 (573-751) | |
| 319-500, gnl|echTel1|scaffold_243420 (736-932) | |
| 319-500, gnl|fr1|chrUn (40133026-40133236) | |
| 319-500, gnl|galGal2|chr20 (4818193-4818411) | |
| 319-500, gnl|hg17|chr20 (35461925-35462145) | |
| 319-500, gnl|Hg17|chr20 (35461934-35462112) | |
| 319-500, gnl|loxAfr1|scaffold_120378 (4337-4136) | |
| 319-500, gnl|mm7|chr2 (157208314-157208534) | |
| 319-500, gnl|Mm7|chr2 (157208323-157208501) | |
| 319-500, gnl|monDom2|scaffold_6 (2186701-2186494) | |
| 319-500, gnl|oryCun1|scaffold_122381 (7993-8161) | |
| 319-500, gnl|panTro1|chr21 (37785035-37785255) | |
| 319-500, gnl|rheMac2|chr10 (27061934-27061724) | |
| 319-500, gnl|rn3|chr3 (148073541-148073741) | |
| 319-500, gnl|tetNig1|chr6 (4456982-4456784) | |
| 319-500, gnl|xenTro1|scaffold_637 (275058-275265) | |
| 572-761, gnl|bosTau2|chr2 (78936825-78937015) | |
| 572-761, gnl|Hg17|chr1 (27625241-27625050) | |
| 572-761, gnl|Mm7|chr4 (132376760-132376964) | |
| 574-743, gnl|bosTau2|chr13 (49326700-49326530) | |
| 574-743, gnl|canFam2|chr24 (28987837-28988004) | |
| 574-743, gnl|danRer3|chr18 (19389719-19389555) | |
| 574-743, gnl|dasNov1|scaffold_128174 (4284-4117) | |
| 574-743, gnl|echTel1|scaffold_243420 (2894-3061) | |
| 574-743, gnl|fr1|chrUn (40133536-40133708) | |
| 574-743, gnl|galGal2|chr20 (4818651-4818818) | |
| 574-743, gnl|hg17|chr20 (35464242-35464409) | |
| 574-743, gnl|Hg17|chr20 (35464249-35464414) | |
| 574-743, gnl|loxAfr1|scaffold_79541 (4799-4640) | |
| 574-743, gnl|mm7|chr2 (157210008-157210172) | |
| 574-743, gnl|Mm7|chr2 (157210013-157210173) | |
| 574-743, gnl|monDom2|scaffold_6 (2183897-2183730) | |
| 574-743, gnl|oryCun1|scaffold_213597 (93947-94113) | |
| 574-743, gnl|panTro1|chr21 (37787354-37787521) | |
| 574-743, gnl|rheMac2|chr10 (27059680-27059513) | |
| 574-743, gnl|rn3|chr3 (148075183-148075347) | |
| 574-743, gnl|tetNig1|chr6 (4456212-4456045) | |
| 574-743, gnl|xenTro1|scaffold_637 (275589-275747) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 176-316, gnl|bosTau2|chr14 (11727436-11727295) | |
| 176-316, gnl|canFam2|chr29 (10400662-10400860) | |
| 176-316, gnl|danRer3|chr21 (27006085-27005926) | |
| 176-316, gnl|dasNov1|scaffold_52978 (4083-3889) | |
| 176-316, gnl|echTel1|scaffold_321073 (42685-42838) | |
| 176-316, gnl|fr1|chrUn (272061339-272061161) | |
| 176-316, gnl|galGal2|chr2 (110373090-110373282) | |
| 176-316, gnl|hg17|chr8 (57028909-57029107) | |
| 176-316, gnl|Hg17|chr8 (57028956-57029097) | |
| 176-316, gnl|loxAfr1|scaffold_96941 (3147-2950) | |
| 176-316, gnl|mm7|chr4 (3675773-3675970) | |
| 176-316, gnl|Mm7|chr4 (3675819-3675960) | |
| 176-316, gnl|monDom2|scaffold_4 (108115387-108115210) | |
| 176-316, gnl|oryCun1|scaffold_199689 (156130-156317) | |
| 176-316, gnl|panTro1|chr7 (58737008-58737206) | |
| 176-316, gnl|rheMac2|chr8 (58560379-58560577) | |
| 176-316, gnl|rn3|chr5 (17013638-17013833) | |
| 176-316, gnl|tetNig1|chrUn_random (16184270-16184426) | |
| 176-316, gnl|xenTro1|scaffold_8 (2692411-2692599) | |
| 319-500, gnl|bosTau2|chr13 (49329151-49328973) | |
| 319-500, gnl|canFam2|chr24 (28985795-28986007) | |
| 319-500, gnl|danRer3|chr18 (19394224-19394034) | |
| 319-500, gnl|dasNov1|scaffold_170364 (573-751) | |
| 319-500, gnl|echTel1|scaffold_243420 (736-932) | |
| 319-500, gnl|fr1|chrUn (40133026-40133236) | |
| 319-500, gnl|galGal2|chr20 (4818193-4818411) | |
| 319-500, gnl|hg17|chr20 (35461925-35462145) | |
| 319-500, gnl|Hg17|chr20 (35461934-35462112) | |
| 319-500, gnl|loxAfr1|scaffold_120378 (4337-4136) | |
| 319-500, gnl|mm7|chr2 (157208314-157208534) | |
| 319-500, gnl|Mm7|chr2 (157208323-157208501) | |
| 319-500, gnl|monDom2|scaffold_6 (2186701-2186494) | |
| 319-500, gnl|oryCun1|scaffold_122381 (7993-8161) | |
| 319-500, gnl|panTro1|chr21 (37785035-37785255) | |
| 319-500, gnl|rheMac2|chr10 (27061934-27061724) | |
| 319-500, gnl|rn3|chr3 (148073541-148073741) | |
| 319-500, gnl|tetNig1|chr6 (4456982-4456784) | |
| 319-500, gnl|xenTro1|scaffold_637 (275058-275265) | |
| 572-761, gnl|bosTau2|chr2 (78936825-78937015) | |
| 572-761, gnl|Hg17|chr1 (27625241-27625050) | |
| 572-761, gnl|Mm7|chr4 (132376760-132376964) | |
| 574-743, gnl|bosTau2|chr13 (49326700-49326530) | |
| 574-743, gnl|canFam2|chr24 (28987837-28988004) | |
| 574-743, gnl|danRer3|chr18 (19389719-19389555) | |
| 574-743, gnl|dasNov1|scaffold_128174 (4284-4117) | |
| 574-743, gnl|echTel1|scaffold_243420 (2894-3061) | |
| 574-743, gnl|fr1|chrUn (40133536-40133708) | |
| 574-743, gnl|galGal2|chr20 (4818651-4818818) | |
| 574-743, gnl|hg17|chr20 (35464242-35464409) | |
| 574-743, gnl|Hg17|chr20 (35464249-35464414) | |
| 574-743, gnl|loxAfr1|scaffold_79541 (4799-4640) | |
| 574-743, gnl|mm7|chr2 (157210008-157210172) | |
| 574-743, gnl|Mm7|chr2 (157210013-157210173) | |
| 574-743, gnl|monDom2|scaffold_6 (2183897-2183730) | |
| 574-743, gnl|oryCun1|scaffold_213597 (93947-94113) | |
| 574-743, gnl|panTro1|chr21 (37787354-37787521) | |
| 574-743, gnl|rheMac2|chr10 (27059680-27059513) | |
| 574-743, gnl|rn3|chr3 (148075183-148075347) | |
| 574-743, gnl|tetNig1|chr6 (4456212-4456045) | |
| 574-743, gnl|xenTro1|scaffold_637 (275589-275747) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.345602) | |
| ill (0.175593) |