Non-Coding RNA Search

Ss1.1-ri11320b_m9.5

Sequence:


               
               CATGCAGCTTCCTCCCCCTCCTGTGCCCTCCCCGCAGTCTTCTACGTAATGAACGGATTT
GTCTCAATAGCTTTGGGCTCCGGTACCCAAGAACGTCACTAGTAGAATGTTTTTCTGCAT
CCGCCATGAGCTCTCCCCCACCCTCCTGCCCGAATGGATGGGAAGCAGACTTTATCTTTT
TTCATCTGCCAGAGTAAAAATAACATCTGAGTTCCTGCATTCGTCAACCTTCTGGTTCTC
TTTCCCTCTGCTAATGTTCTGTAGGAGGAGCAACCTCCACCCACATTCCACCCAGGCTTT
CAGGATTCAGAGCCTCCGCTCTGGGCTTCCTGCAGTGTTCAACCAGATGCGTGAGGCCCA
ACCCAAGAAGGCGCATCCTTAACGAGTTGAATTTCCGCATTTAGAATCCCTTTGCTGAAC
CAAAGAATTTTTGTTTCCCAGAGTAGTATTTTTAAAGTTTGTGTGTTGTACATAGAGGAA
GCATTTTTAATAGAATCACCGTAACCTGCTTAATGAATTTCTAAGATTTTTAAAAGATTT
TTATTTGCATTTGGTTTGTAAGCACTGTATGTTTTTCCATGTATATATTTTTAAATTACT
CACCTAATAAGTGTAGGCAGTGTATGTGCTGGGTGGAGAGTAGAACTGTGCAGTTAAACT
AGCAATGATATTCTCAATAGCTGTACTTCAAAGGAGACTTACACACGTACAAATAAGACC
ACCTAGAGTACTACAGGTTTGTTTTGGCCATGATTGGCCATGTCACTGTCTAATCTGCAC
ATGCGATTGGATTGTGTTTCCTTCAGAGGACTTCATAAAGATGAAGAAATGCCAGACTGG
ACTGTAAGACAGTCCCATCCTGCTTCTCAGCTGGGCGACTGTGGGAAAATGACTCTGCGT
TTTGAGTCCCAGCTTTCTCACCCGTAGAAAAAGGCACAATAAAGTAATACCTACTTTAAG
GGCTTGTTTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGCAGCTTCCTCCCCCTCCTGTGCCCTCCCCGCAGTCTTCTACGTAATGAACGGATTT
GTCTCAATAGCTTTGGGCTCCGGTACCCAAGAACGTCACTAGTAGAATGTTTTTCTGCAT
CCGCCATGAGCTCTCCCCCACCCTCCTGCCCGAATGGATGGGAAGCAGACTTTATCTTTT
TTCATCTGCCAGAGTAAAAATAACATCTGAGTTCCTGCATTCGTCAACCTTCTGGTTCTC
TTTCCCTCTGCTAATGTTCTGTAGGAGGAGCAACCTCCACCCACATTCCACCCAGGCTTT
CAGGATTCAGAGCCTCCGCTCTGGGCTTCCTGCAGTGTTCAACCAGATGCGTGAGGCCCA
ACCCAAGAAGGCGCATCCTTAACGAGTTGAATTTCCGCATTTAGAATCCCTTTGCTGAAC
CAAAGAATTTTTGTTTCCCAGAGTAGTATTTTTAAAGTTTGTGTGTTGTACATAGAGGAA
GCATTTTTAATAGAATCACCGTAACCTGCTTAATGAATTTCTAAGATTTTTAAAAGATTT
TTATTTGCATTTGGTTTGTAAGCACTGTATGTTTTTCCATGTATATATTTTTAAATTACT
CACCTAATAAGTGTAGGCAGTGTATGTGCTGGGTGGAGAGTAGAACTGTGCAGTTAAACT
AGCAATGATATTCTCAATAGCTGTACTTCAAAGGAGACTTACACACGTACAAATAAGACC
ACCTAGAGTACTACAGGTTTGTTTTGGCCATGATTGGCCATGTCACTGTCTAATCTGCAC
ATGCGATTGGATTGTGTTTCCTTCAGAGGACTTCATAAAGATGAAGAAATGCCAGACTGG
ACTGTAAGACAGTCCCATCCTGCTTCTCAGCTGGGCGACTGTGGGAAAATGACTCTGCGT
TTTGAGTCCCAGCTTTCTCACCCGTAGAAAAAGGCACAATAAAGTAATACCTACTTTAAG
GGCTTGTTTGGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               15-204, gnl|bosTau2|chr6 (53258618-53258430)
               

               
               15-204, gnl|Hg17|chr4 (82366908-82366717)
               

               
               15-204, gnl|Mm7|chr5 (98145577-98145400)
               


               
               210-972, gnl|bosTau2|chr6 (53258397-53257630)
               

               
               210-972, gnl|Hg17|chr4 (82366709-82365934)
               

               
               210-972, gnl|Mm7|chr5 (98145392-98144665)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-204, gnl|bosTau2|chr6 (53258618-53258430)
               

               
               15-204, gnl|Hg17|chr4 (82366908-82366717)
               

               
               15-204, gnl|Mm7|chr5 (98145577-98145400)
               


               
               210-972, gnl|bosTau2|chr6 (53258397-53257630)
               

               
               210-972, gnl|Hg17|chr4 (82366709-82365934)
               

               
               210-972, gnl|Mm7|chr5 (98145392-98144665)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               sin (0.349895)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               nje (0.16592)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               nje (0.16592)

	15-204, gnl\|bosTau2\|chr6 (53258618-53258430)
	15-204, gnl\|Hg17\|chr4 (82366908-82366717)
	15-204, gnl\|Mm7\|chr5 (98145577-98145400)

	210-972, gnl\|bosTau2\|chr6 (53258397-53257630)
	210-972, gnl\|Hg17\|chr4 (82366709-82365934)
	210-972, gnl\|Mm7\|chr5 (98145392-98144665)