Non-Coding RNA Search

Ss1.1-rill302b_b7.5

Sequence:


               
               GAAAGCACTCCCTCTGGCTAATGTTTTTTAGCGATTGGGAGAGTTGTGATGTGGTTTGTG
GTGGAACGCGATCTGAGGAGGAAATGTTACACCGGACGCTTCCCTGTCTTTGACCTTTTT
TAAAGGAAGAGGAAGTTAACTGACATTACCCATCACCCCCAAAAGTCTCACTTCTTGGAA
GGCTCGTGTTATGCTGATTGTTTTTAAAGGGCTTTAATTTACTCTTCATAGGCCTCATGT
CTGGAGGGTGCCAGGGCTCCTGGAGGAAAGTCTAGTATTGAATGTGTCTAATTTCATGTT
ATTTGCTCGATTGTAGAATTTTTGGACAGCTTTGATTGGAAAGACTTGGTGACGAGGTAT
TTTAGTTAAAAACCAGCGGGTGAAGGTAAAACGTTGAGTTCATGAATTCCACGGAGATTT
AGAGAGGTATTATTACCTACCTGAGAATAACATTTCATCATGCACCCCTCCCCCCCAATC
CGTTGTATTTGTGTAAATCAATAAATAATCATTGGATGGTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGCACTCCCTCTGGCTAATGTTTTTTAGCGATTGGGAGAGTTGTGATGTGGTTTGTG
GTGGAACGCGATCTGAGGAGGAAATGTTACACCGGACGCTTCCCTGTCTTTGACCTTTTT
TAAAGGAAGAGGAAGTTAACTGACATTACCCATCACCCCCAAAAGTCTCACTTCTTGGAA
GGCTCGTGTTATGCTGATTGTTTTTAAAGGGCTTTAATTTACTCTTCATAGGCCTCATGT
CTGGAGGGTGCCAGGGCTCCTGGAGGAAAGTCTAGTATTGAATGTGTCTAATTTCATGTT
ATTTGCTCGATTGTAGAATTTTTGGACAGCTTTGATTGGAAAGACTTGGTGACGAGGTAT
TTTAGTTAAAAACCAGCGGGTGAAGGTAAAACGTTGAGTTCATGAATTCCACGGAGATTT
AGAGAGGTATTATTACCTACCTGAGAATAACATTTCATCATGCACCCCTCCCCCCCAATC
CGTTGTATTTGTGTAAATCAATAAATAATCATTGGATGGTAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-90, + strand, RNAz p=0.943617

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-90, + strand, RNAz p=0.943617

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-518, gnl|bosTau2|chr2 (85205608-85206132)
               

               
               1-518, gnl|Hg17|chr1 (21247428-21246918)
               

               
               1-518, gnl|Mm7|chr4 (137373054-137373743)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-518, gnl|bosTau2|chr2 (85205608-85206132)
               

               
               1-518, gnl|Hg17|chr1 (21247428-21246918)
               

               
               1-518, gnl|Mm7|chr4 (137373054-137373743)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               ill (0.175593)
               

               
               pty (0.142714)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               pty (0.142714)

	1-518, gnl\|bosTau2\|chr2 (85205608-85206132)
	1-518, gnl\|Hg17\|chr1 (21247428-21246918)
	1-518, gnl\|Mm7\|chr4 (137373054-137373743)