Non-Coding RNA Search

Ss1.1-rill302b_g6.5

Sequence:


               
               TGGTGTTTAGTTTTGGCTTCCAGTAGACACCGTAAACGGGTTAGACTCACTAAACCCGCG
CCTCTCAACCTCCGCCATCCGCCGCATGACCGCGGTGAGTCGGGCAGGCAGGTGACGCGC
CCTTCACGATGCCCCCAGGTCTCCACGGGGCGCTCTGCTGCAGTTCTGAGGGCTCCATCC
TCCTCGGATCCCCGCGTTGTCCGTAACTCCTGATGGCGACACTTTGTTCTGAGACGACGG
CTATCTTCTCGTTCCTAAAGTGCATCTTTGTTGGGTGTGTGTCTATCCAACCCGGATTGA
TGCTTAGACCTTTGTGAGAGGAACCCTTCCCCCTTCCCCCCCCCACAAGCCCCCACGCAG
GCCCCCAGCGGTTTCAAAATATTAAAGCCGTCGGGAGGGTTGAGTCTGATGTTCTGGGGG
GGGGCCGGGGATCTCCATGTGTTTTGAGTATTGAACTGCCGTTGACATCTAAAGTCTCAA
CCATGCTGTTTTGCTCCACACTTCAGTAATCAGGACATCCAGCAAACCCATAAAAAACCA
AACTAATAGCATGAATATTCAGTGACCTAGAATACTAATTATTGTCATGAATATTAATGC
GATCGGACTTGCTTTTTCCTCTCCTCTTTCTCTCCCGTCCTCTCTCTCTCTCTCTCTCCC
TCTCTCTTTTTTTCCACTTAGCCGGCTCTAAAGATGGGTCATAATGAGAGCATTTAAGAG
GGAGCGCGCTCTCCGCCGTGACAGGGACGGCGGAATAAGGAGAGCTTGATTAACGCCGAG
CACTTGGGGGAGAGATGAGAGGCTTCACGTGGGCCTGTTCGGGGGAGGCAATGAGACACC
GGCGGCTCTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGTTTAGTTTTGGCTTCCAGTAGACACCGTAAACGGGTTAGACTCACTAAACCCGCG
CCTCTCAACCTCCGCCATCCGCCGCATGACCGCGGTGAGTCGGGCAGGCAGGTGACGCGC
CCTTCACGATGCCCCCAGGTCTCCACGGGGCGCTCTGCTGCAGTTCTGAGGGCTCCATCC
TCCTCGGATCCCCGCGTTGTCCGTAACTCCTGATGGCGACACTTTGTTCTGAGACGACGG
CTATCTTCTCGTTCCTAAAGTGCATCTTTGTTGGGTGTGTGTCTATCCAACCCGGATTGA
TGCTTAGACCTTTGTGAGAGGAACCCTTCCCCCTTCCCCCCCCCACAAGCCCCCACGCAG
GCCCCCAGCGGTTTCAAAATATTAAAGCCGTCGGGAGGGTTGAGTCTGATGTTCTGGGGG
GGGGCCGGGGATCTCCATGTGTTTTGAGTATTGAACTGCCGTTGACATCTAAAGTCTCAA
CCATGCTGTTTTGCTCCACACTTCAGTAATCAGGACATCCAGCAAACCCATAAAAAACCA
AACTAATAGCATGAATATTCAGTGACCTAGAATACTAATTATTGTCATGAATATTAATGC
GATCGGACTTGCTTTTTCCTCTCCTCTTTCTCTCCCGTCCTCTCTCTCTCTCTCTCTCCC
TCTCTCTTTTTTTCCACTTAGCCGGCTCTAAAGATGGGTCATAATGAGAGCATTTAAGAG
GGAGCGCGCTCTCCGCCGTGACAGGGACGGCGGAATAAGGAGAGCTTGATTAACGCCGAG
CACTTGGGGGAGAGATGAGAGGCTTCACGTGGGCCTGTTCGGGGGAGGCAATGAGACACC
GGCGGCTCTGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               501-728, - strand, RNAz p=0.959912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               501-728, - strand, RNAz p=0.959912

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               368-506, - strand, RNAmicro p=0.985315

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               368-506, - strand, RNAmicro p=0.985315

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               128-852, gnl|bosTau2|chr3 (82035614-82036374)
               

               
               128-852, gnl|Hg17|chr2 (236607560-236608323)
               

               
               128-852, gnl|Mm7|chr1 (89655133-89655871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-852, gnl|bosTau2|chr3 (82035614-82036374)
               

               
               128-852, gnl|Hg17|chr2 (236607560-236608323)
               

               
               128-852, gnl|Mm7|chr1 (89655133-89655871)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	128-852, gnl\|bosTau2\|chr3 (82035614-82036374)
	128-852, gnl\|Hg17\|chr2 (236607560-236608323)
	128-852, gnl\|Mm7\|chr1 (89655133-89655871)