Non-Coding RNA Search

Ss1.1-rill302b_l7.5

Sequence:


               
               TTTTTTTTTTTTGGTTTTGGGCCAGGGGGTTGGTTGGTTTTGGGTTTTCCTTGGGGATTG
GGGTAAAGGATACCTCCCCCCCCAAACTATCAGCACAAAACAGGGTATTGATTTTTAACT
CTGATGTTGCTATTGGAGTTGAATACTAAATAAGTAACTATAGTGAGGGAAATACATTTC
TAATAAAATTCCCTACATTCTAGAGACATCCCTGTTTTAATTTTTTACCTAAATCTTTTT
GTGCTTTATCGTGTAAAGAGAAAAAAAAATGTACTGAGTTATAATGCATTTTATTAACAC
TATGTACATATTAGCTGCTTTGTGTTCAGAATGGTAGCAGTTGCTTTGTATATTAAAGTG
ATCCTTGTGAATTTGTGAAATATTGTCATAAAGTGCTTTTTCTTACTGTAATCTTTGTGG
TATCAACTGTCATAATGCCCTTTTTACACAAACATTTATGTGCAGTCACATAAACATGCT
TTTAAAAACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTGGTTTTGGGCCAGGGGGTTGGTTGGTTTTGGGTTTTCCTTGGGGATTG
GGGTAAAGGATACCTCCCCCCCCAAACTATCAGCACAAAACAGGGTATTGATTTTTAACT
CTGATGTTGCTATTGGAGTTGAATACTAAATAAGTAACTATAGTGAGGGAAATACATTTC
TAATAAAATTCCCTACATTCTAGAGACATCCCTGTTTTAATTTTTTACCTAAATCTTTTT
GTGCTTTATCGTGTAAAGAGAAAAAAAAATGTACTGAGTTATAATGCATTTTATTAACAC
TATGTACATATTAGCTGCTTTGTGTTCAGAATGGTAGCAGTTGCTTTGTATATTAAAGTG
ATCCTTGTGAATTTGTGAAATATTGTCATAAAGTGCTTTTTCTTACTGTAATCTTTGTGG
TATCAACTGTCATAATGCCCTTTTTACACAAACATTTATGTGCAGTCACATAAACATGCT
TTTAAAAACTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               103-222, + strand, RNAz p=0.896505

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               103-222, + strand, RNAz p=0.896505

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-492, gnl|bosTau2|chr2 (62283098-62282627)
               

               
               23-492, gnl|Hg17|chr2 (208293212-208293662)
               

               
               23-492, gnl|Mm7|chr1 (64844255-64844699)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-492, gnl|bosTau2|chr2 (62283098-62282627)
               

               
               23-492, gnl|Hg17|chr2 (208293212-208293662)
               

               
               23-492, gnl|Mm7|chr1 (64844255-64844699)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)

	23-492, gnl\|bosTau2\|chr2 (62283098-62282627)
	23-492, gnl\|Hg17\|chr2 (208293212-208293662)
	23-492, gnl\|Mm7\|chr1 (64844255-64844699)