Non-Coding RNA Search

Ss1.1-rill303b_b16.5

Sequence:


               
               TCTTCTGGAGCCCAAAGTCTCCTAAATGTTCTGATCCCCCCACCACCCCCTACCCTCCCA
ACACACACACTCAAGTTTACAGCCAGTAGCTAGGTCTCACTCTATTAGAGCTCTAAAACT
AAAGCCTTTCTTTCCCCTTCCTGCACAAGCATTTCTCTCCCAGGGCAGGCCAGACAACTT
GGCATTGTGGGAGGTGCTATGCTGCTCAGCCCTGTCCCAGTAGGCCCTGTTGGCCTCTGT
TGCACATTGACTCAGGGAGCCAGAGAGCCAGGTGGAGGTCATACCTCTCAGCCCTTTGGG
GTGCACAATCAGTCCCCAAAAAGACTGAGATGTGTTGATGTGCTAAGAGGTAGACATCCT
AATAGCTCAGACTGACTTGTAAAACCCAGATGCTGGTTCCAGAGCTCTGTCCTGAGAACA
CAGCCTGTGGCAGAAGACTTGAGCATGTCAATTCTAGTCTTGGGAGTGGAGAGCTCAGGC
TCAGGCTACAGTCCTGTGAGTACAGTTGTGATTATTTACTGTAACATGAATTCAGAATCC
TGCATTTTTAGGTTCCTTTTGATTCTGATTTGAGGCCTCTGGATGCTCTTTGGGTCTGTG
TATTTTGAGGCTGGTGGACAAAGTGTATCATCATGATTCTGCTGTTGCTTCTCACAGTCT
TCCTCACTTTCATTTCATATCATTCCAGAGTTCTTTTCTATTAGCCAAACTTTTTTGTAG
ACCCTTTTGTTCCTCCTCCCTGGTAATTATTTGCTTCTTTATTTGCTGTTGTCCTTTTGT
TTAGGACACACCTAGTAAGCGATTGAAGGGGAAAATGTGTAGTTCTCCACTGAAAATTAA
CTCTCCACCCTTCCTGATTTTTAAAAAGGTTTACATTTACAAAGATTCAGATGCAATTTT
CAACTATTCTGAAACCAGCAGGACACACCTGACTTTAATAGTTTTCTTAGCTGAAATTGT
AGATGTTTTTCTTCAGTTTAACTTATGAGAAAAGATTACCTGATGCATTTTGTGTTCACC
TTCCCCTTTAGTGGTTTATTTTGTCTTTTTCTGCCATCTGTCTACTAATAAAATGTGAAA
TAAAATATACCTGTATTGCTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTCTGGAGCCCAAAGTCTCCTAAATGTTCTGATCCCCCCACCACCCCCTACCCTCCCA
ACACACACACTCAAGTTTACAGCCAGTAGCTAGGTCTCACTCTATTAGAGCTCTAAAACT
AAAGCCTTTCTTTCCCCTTCCTGCACAAGCATTTCTCTCCCAGGGCAGGCCAGACAACTT
GGCATTGTGGGAGGTGCTATGCTGCTCAGCCCTGTCCCAGTAGGCCCTGTTGGCCTCTGT
TGCACATTGACTCAGGGAGCCAGAGAGCCAGGTGGAGGTCATACCTCTCAGCCCTTTGGG
GTGCACAATCAGTCCCCAAAAAGACTGAGATGTGTTGATGTGCTAAGAGGTAGACATCCT
AATAGCTCAGACTGACTTGTAAAACCCAGATGCTGGTTCCAGAGCTCTGTCCTGAGAACA
CAGCCTGTGGCAGAAGACTTGAGCATGTCAATTCTAGTCTTGGGAGTGGAGAGCTCAGGC
TCAGGCTACAGTCCTGTGAGTACAGTTGTGATTATTTACTGTAACATGAATTCAGAATCC
TGCATTTTTAGGTTCCTTTTGATTCTGATTTGAGGCCTCTGGATGCTCTTTGGGTCTGTG
TATTTTGAGGCTGGTGGACAAAGTGTATCATCATGATTCTGCTGTTGCTTCTCACAGTCT
TCCTCACTTTCATTTCATATCATTCCAGAGTTCTTTTCTATTAGCCAAACTTTTTTGTAG
ACCCTTTTGTTCCTCCTCCCTGGTAATTATTTGCTTCTTTATTTGCTGTTGTCCTTTTGT
TTAGGACACACCTAGTAAGCGATTGAAGGGGAAAATGTGTAGTTCTCCACTGAAAATTAA
CTCTCCACCCTTCCTGATTTTTAAAAAGGTTTACATTTACAAAGATTCAGATGCAATTTT
CAACTATTCTGAAACCAGCAGGACACACCTGACTTTAATAGTTTTCTTAGCTGAAATTGT
AGATGTTTTTCTTCAGTTTAACTTATGAGAAAAGATTACCTGATGCATTTTGTGTTCACC
TTCCCCTTTAGTGGTTTATTTTGTCTTTTTCTGCCATCTGTCTACTAATAAAATGTGAAA
TAAAATATACCTGTATTGCTACTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               877-1104, gnl|bosTau2|chr16 (53724037-53724266)
               

               
               877-1104, gnl|Hg17|chr9 (33910170-33910392)
               

               
               877-1104, gnl|Mm7|chr4 (41331654-41331860)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               877-1104, gnl|bosTau2|chr16 (53724037-53724266)
               

               
               877-1104, gnl|Hg17|chr9 (33910170-33910392)
               

               
               877-1104, gnl|Mm7|chr4 (41331654-41331860)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               tes (0.415628)
               

               
               ill (0.351185)
               

               
               fhi (0.339155)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               ill (0.351185)
               

               
               fhi (0.339155)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	877-1104, gnl\|bosTau2\|chr16 (53724037-53724266)
	877-1104, gnl\|Hg17\|chr9 (33910170-33910392)
	877-1104, gnl\|Mm7\|chr4 (41331654-41331860)

	tes (0.415628)
	ill (0.351185)
	fhi (0.339155)
	pan (0.23596)
	ece (0.229305)
	hea (0.204499)
	fbs (0.175346)
	hlv (0.139256)
	pla (0.133672)
	ret (0.128733)
	eru (0.120048)
	spc (0.113366)