Non-Coding RNA Search

Ss1.1-rill304b_m4.5

Sequence:


               
               ACATACCTTCCTAAGTCAAGATTCACAAATGGGTAACTAGTCTCATGGGCCCTGGGAGTA
TGTCCGCAAAGGTTTTCATCACTGCTTGGGGATTAGCAGAAGATAGAGCCACAATAGTTA
TTAATTACAAAGCCCTTGATGGCAGAGAAGTGATTTACTGCAGAGTAAAATCCTGGGTAG
GGTCAATGGAAGAACAGGAGAAAGTACAAGGGCCCAAGATGGCATCAGTTATGCTCCCAG
CCATACAGTAGGTCGAGGTGCAGTCAGCCTGATCCCTTCAATATAAAGTCTCCTGTGTGC
CTAATTTTTTTTTTTTTTTTGTCTTTTTGGGGCTGCACCCGTGGCATATGGAGGTTCCCA
GGCTAGGGGTCGAATCCAAACTGTAGCTGCCGGCCTGCACTCCACACTGACAAGGGGCCA
CTGGAACAATTTTATAGTTAACTTAGGGCATGAAAGTAGATGCAGGGAGTTCCTGTCATG
GCACAGTGGAAAGGGATCAAACCCACAACCTCATGGTTCCTGGTCAGATTCATTTCCGCT
GTGCCACAACGGGAACGCCTGCCAAATTTTCGATCTGTACAATGTGAGTAAGTTAAATAT
GTCGCCTCTATTTCAAGAAGCTTTATGTGAGTGAAGTGGTATAACAGGTTTGAAAGTACT
TAGTTCTAAGGAGCCGTAACAGTCAGGTCAATTCTG------------------------
TGAAGGCGCCTACCTGTTTTCCAAGGCCCACGGTTTTCTTCCTGTTAGCTTTCTAACCAT
CACTCTTTGGGGGTTTGGCTTTTAGCTTCAATGCTGTGGTATAAATGGCACGAGTGATTG
GCACGGCAGACCACCAACATCTTGTCCCACAGACTCACAAGTTAAGGTAATATTCTTCTT
TTTTCGGAAACTTTTCTGTGATTGGCCAGTTTGGTTAAACTTTTAATTACCTTAGGAACT
CCAGTCATATAGGACCTAGTCCTCCCAGCCAGAAACAGGAAACTTTAAACAACAAAAAAA
AAGACCAGAGAAACAACTCCTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATACCTTCCTAAGTCAAGATTCACAAATGGGTAACTAGTCTCATGGGCCCTGGGAGTA
TGTCCGCAAAGGTTTTCATCACTGCTTGGGGATTAGCAGAAGATAGAGCCACAATAGTTA
TTAATTACAAAGCCCTTGATGGCAGAGAAGTGATTTACTGCAGAGTAAAATCCTGGGTAG
GGTCAATGGAAGAACAGGAGAAAGTACAAGGGCCCAAGATGGCATCAGTTATGCTCCCAG
CCATACAGTAGGTCGAGGTGCAGTCAGCCTGATCCCTTCAATATAAAGTCTCCTGTGTGC
CTAATTTTTTTTTTTTTTTTGTCTTTTTGGGGCTGCACCCGTGGCATATGGAGGTTCCCA
GGCTAGGGGTCGAATCCAAACTGTAGCTGCCGGCCTGCACTCCACACTGACAAGGGGCCA
CTGGAACAATTTTATAGTTAACTTAGGGCATGAAAGTAGATGCAGGGAGTTCCTGTCATG
GCACAGTGGAAAGGGATCAAACCCACAACCTCATGGTTCCTGGTCAGATTCATTTCCGCT
GTGCCACAACGGGAACGCCTGCCAAATTTTCGATCTGTACAATGTGAGTAAGTTAAATAT
GTCGCCTCTATTTCAAGAAGCTTTATGTGAGTGAAGTGGTATAACAGGTTTGAAAGTACT
TAGTTCTAAGGAGCCGTAACAGTCAGGTCAATTCTG------------------------
TGAAGGCGCCTACCTGTTTTCCAAGGCCCACGGTTTTCTTCCTGTTAGCTTTCTAACCAT
CACTCTTTGGGGGTTTGGCTTTTAGCTTCAATGCTGTGGTATAAATGGCACGAGTGATTG
GCACGGCAGACCACCAACATCTTGTCCCACAGACTCACAAGTTAAGGTAATATTCTTCTT
TTTTCGGAAACTTTTCTGTGATTGGCCAGTTTGGTTAAACTTTTAATTACCTTAGGAACT
CCAGTCATATAGGACCTAGTCCTCCCAGCCAGAAACAGGAAACTTTAAACAACAAAAAAA
AAGACCAGAGAAACAACTCCTATT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-309, gnl|bosTau2|chr3 (30379350-30379643)
               


               
               708-1011, gnl|bosTau2|chr3 (30379828-30380116)
               

               
               708-1011, gnl|Hg17|chr1 (111151239-111151534)
               

               
               708-1011, gnl|Mm7|chr3 (106581666-106581376)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-309, gnl|bosTau2|chr3 (30379350-30379643)
               


               
               708-1011, gnl|bosTau2|chr3 (30379828-30380116)
               

               
               708-1011, gnl|Hg17|chr1 (111151239-111151534)
               

               
               708-1011, gnl|Mm7|chr3 (106581666-106581376)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ill (0.175593)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               med (0.116252)

	1-309, gnl\|bosTau2\|chr3 (30379350-30379643)

	708-1011, gnl\|bosTau2\|chr3 (30379828-30380116)
	708-1011, gnl\|Hg17\|chr1 (111151239-111151534)
	708-1011, gnl\|Mm7\|chr3 (106581666-106581376)