Non-Coding RNA Search

Ss1.1-rill305b_i23.5

Sequence:


               
               GGCACGCAGCAGGCGGAGAGGACGTGCGCGCCCTCGCTCCTTCCTCTTTCTCGACTCCAT
CTTCGCGGTAGCGGCAGGGGTGTCCGCGCTTCAGTCGCCAACATGCAGCTCTTTGTCCGC
GCCCAGGAGCTACACACTCTCGAGGTGACCGGCCAGGAGACGGTCGCCCAGATCAAGGCT
CATGTAGCCTCGTTGGAGGGCATCGCTCCAGAAGATCAAGTCCTGCTCTTGGCAGGCACG
CCCCTGGAGGATGATGCCATCCTCGGCCAGTGTGGGGTGGAGGCCCTGAGCACTCTGGAA
GTAGCCGGCCGTATGCTTGGAGGTAAAGTTCATGGTTCCCTGGCCCGTGCTGGGAAAGTC
AGAGGTCAGACTCCCAAGGTGGCCAAACAAGAGAAAAAGAAGAAGAAGACCGGCCGGGCC
AAGAGACGTATGCAATACAACCGGCGCTTTGTCAATGTCGTGCCCACCTTTGGCAAGAAG
AAGGGACCCAATGCCAACTCTTAAGTCCTTTGTAATCCCGGCTTTCACTAATAAAGCCAC
TTAGTCCAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACGCAGCAGGCGGAGAGGACGTGCGCGCCCTCGCTCCTTCCTCTTTCTCGACTCCAT
CTTCGCGGTAGCGGCAGGGGTGTCCGCGCTTCAGTCGCCAACATGCAGCTCTTTGTCCGC
GCCCAGGAGCTACACACTCTCGAGGTGACCGGCCAGGAGACGGTCGCCCAGATCAAGGCT
CATGTAGCCTCGTTGGAGGGCATCGCTCCAGAAGATCAAGTCCTGCTCTTGGCAGGCACG
CCCCTGGAGGATGATGCCATCCTCGGCCAGTGTGGGGTGGAGGCCCTGAGCACTCTGGAA
GTAGCCGGCCGTATGCTTGGAGGTAAAGTTCATGGTTCCCTGGCCCGTGCTGGGAAAGTC
AGAGGTCAGACTCCCAAGGTGGCCAAACAAGAGAAAAAGAAGAAGAAGACCGGCCGGGCC
AAGAGACGTATGCAATACAACCGGCGCTTTGTCAATGTCGTGCCCACCTTTGGCAAGAAG
AAGGGACCCAATGCCAACTCTTAAGTCCTTTGTAATCCCGGCTTTCACTAATAAAGCCAC
TTAGTCCAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51316581|sp|P62865|UBIM_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51316581|sp|P62865|UBIM_BOVIN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-215, gnl|bosTau2|chr20 (17851687-17851900)
               

               
               2-215, gnl|Hg17|chr18 (70208613-70208400)
               

               
               2-215, gnl|Mm7|chr16 (76401026-76400836)
               


               
               339-565, gnl|bosTau2|chr12 (11498728-11498945)
               

               
               339-565, gnl|Hg17|chr18 (70208276-70208034)
               

               
               339-565, gnl|Mm7|chr16 (76400712-76400488)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-215, gnl|bosTau2|chr20 (17851687-17851900)
               

               
               2-215, gnl|Hg17|chr18 (70208613-70208400)
               

               
               2-215, gnl|Mm7|chr16 (76401026-76400836)
               


               
               339-565, gnl|bosTau2|chr12 (11498728-11498945)
               

               
               339-565, gnl|Hg17|chr18 (70208276-70208034)
               

               
               339-565, gnl|Mm7|chr16 (76400712-76400488)

Expressed library(ies): 66 entry(ies)

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Expressed library(ies): 66 entry(ies)

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               csp (4.19084)
               

               
               cag (4.08225)
               

               
               mcp (3.92491)
               

               
               elu (3.46821)
               

               
               duo (3.11042)
               

               
               cly (3.01605)
               

               
               nco (2.58774)
               

               
               nep (2.57495)
               

               
               ill (2.4583)
               

               
               fty (2.11008)
               

               
               hlv (2.08885)
               

               
               nlu (1.91681)
               

               
               nca (1.91623)
               

               
               med (1.86003)
               

               
               cov (1.85014)
               

               
               eje (1.77901)
               

               
               col (1.75507)
               

               
               ton (1.755)
               

               
               cga (1.67457)
               

               
               cki (1.65235)
               

               
               nmm (1.59363)
               

               
               lnt (1.56539)
               

               
               cst (1.5404)
               

               
               eep (1.47077)
               

               
               ecc (1.38042)
               

               
               fce (1.35796)
               

               
               ebs (1.30131)
               

               
               nms (1.28315)
               

               
               ese (1.26502)
               

               
               eli (1.21451)
               

               
               eru (1.20048)
               

               
               eye (1.19352)
               

               
               cut (1.01954)
               

               
               fli (1.0144)
               

               
               nje (0.99552)
               

               
               cje (0.991408)
               

               
               ute (0.929491)
               

               
               mas (0.84122)
               

               
               clu (0.837521)
               

               
               amn (0.835422)
               

               
               jca (0.797721)
               

               
               jej (0.791374)
               

               
               cli (0.764059)
               

               
               ece (0.687916)
               

               
               pty (0.570858)
               

               
               ssp (0.542079)
               

               
               fbs (0.526039)
               

               
               che (0.408942)
               

               
               pgl (0.35545)
               

               
               fhi (0.339155)
               

               
               nbm (0.297974)
               

               
               hyp (0.285673)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 66 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (4.19084)
               

               
               cag (4.08225)
               

               
               mcp (3.92491)
               

               
               elu (3.46821)
               

               
               duo (3.11042)
               

               
               cly (3.01605)
               

               
               nco (2.58774)
               

               
               nep (2.57495)
               

               
               ill (2.4583)
               

               
               fty (2.11008)
               

               
               hlv (2.08885)
               

               
               nlu (1.91681)
               

               
               nca (1.91623)
               

               
               med (1.86003)
               

               
               cov (1.85014)
               

               
               eje (1.77901)
               

               
               col (1.75507)
               

               
               ton (1.755)
               

               
               cga (1.67457)
               

               
               cki (1.65235)
               

               
               nmm (1.59363)
               

               
               lnt (1.56539)
               

               
               cst (1.5404)
               

               
               eep (1.47077)
               

               
               ecc (1.38042)
               

               
               fce (1.35796)
               

               
               ebs (1.30131)
               

               
               nms (1.28315)
               

               
               ese (1.26502)
               

               
               eli (1.21451)
               

               
               eru (1.20048)
               

               
               eye (1.19352)
               

               
               cut (1.01954)
               

               
               fli (1.0144)
               

               
               nje (0.99552)
               

               
               cje (0.991408)
               

               
               ute (0.929491)
               

               
               mas (0.84122)
               

               
               clu (0.837521)
               

               
               amn (0.835422)
               

               
               jca (0.797721)
               

               
               jej (0.791374)
               

               
               cli (0.764059)
               

               
               ece (0.687916)
               

               
               pty (0.570858)
               

               
               ssp (0.542079)
               

               
               fbs (0.526039)
               

               
               che (0.408942)
               

               
               pgl (0.35545)
               

               
               fhi (0.339155)
               

               
               nbm (0.297974)
               

               
               hyp (0.285673)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	2-215, gnl\|bosTau2\|chr20 (17851687-17851900)
	2-215, gnl\|Hg17\|chr18 (70208613-70208400)
	2-215, gnl\|Mm7\|chr16 (76401026-76400836)

	339-565, gnl\|bosTau2\|chr12 (11498728-11498945)
	339-565, gnl\|Hg17\|chr18 (70208276-70208034)
	339-565, gnl\|Mm7\|chr16 (76400712-76400488)

	csp (4.19084)
	cag (4.08225)
	mcp (3.92491)
	elu (3.46821)
	duo (3.11042)
	cly (3.01605)
	nco (2.58774)
	nep (2.57495)
	ill (2.4583)
	fty (2.11008)
	hlv (2.08885)
	nlu (1.91681)
	nca (1.91623)
	med (1.86003)
	cov (1.85014)
	eje (1.77901)
	col (1.75507)
	ton (1.755)
	cga (1.67457)
	cki (1.65235)
	nmm (1.59363)
	lnt (1.56539)
	cst (1.5404)
	eep (1.47077)
	ecc (1.38042)
	fce (1.35796)
	ebs (1.30131)
	nms (1.28315)
	ese (1.26502)
	eli (1.21451)
	eru (1.20048)
	eye (1.19352)
	cut (1.01954)
	fli (1.0144)
	nje (0.99552)
	cje (0.991408)
	ute (0.929491)
	mas (0.84122)
	clu (0.837521)
	amn (0.835422)
	jca (0.797721)
	jej (0.791374)
	cli (0.764059)
	ece (0.687916)
	pty (0.570858)
	ssp (0.542079)
	fbs (0.526039)
	che (0.408942)
	pgl (0.35545)
	fhi (0.339155)
	nbm (0.297974)
	hyp (0.285673)
	ova (0.258264)
	cbe (0.239234)
	hea (0.204499)
	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	tbr (0.154178)
	bfe (0.149858)
	lin (0.145603)
	pla (0.133672)
	bla (0.124347)
	spc (0.113366)
	cty (0.10408)