Non-Coding RNA Search

Ss1.1-rill305b_j3.5

Sequence:


               
               CTTGAATGAGGTGCTTGAAAGAGGGGGACGGTGGGGGGGGGGCGGCTACCTGTGAACAAA
CATTGGCAGCGGAGGGAAAATAAGTGTTCCTGGACTTTGGACTAGTTTACAGCCAGATAG
TCTAAAAGCAGTGAAACACTGCTCTCTGTAGTCCCTGAAAACAAATGAGACCCATAACAC
ACTTGCCTAAGCTTTTAAAACAGAAATTGGTGCAGCACTAGGAAAGCTGTTCACCTCACC
CCATCTCAATATAGTTTGCTTTTCTTCCTCTTCTGAGACAGCTTTCGTATTGCTGAGCAC
AGTCTCACACACTTTCCTGTTAGACAGTTTGGTTTGCTCTTCTCATCTGTTTAACCCTTC
CCGCGTTCCTATGCGAAAGCCTATAGATGTATTGATGAACACACATGTACACACACACAC
TTGACTATGAAAAATTCCGTTCGCGTTCGCTTTCCTAATCTGTTCAACGATTCATTCATG
AAGCGCGTCGTGAGGCCATTACTGGGGAAGGAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAATGAGGTGCTTGAAAGAGGGGGACGGTGGGGGGGGGGCGGCTACCTGTGAACAAA
CATTGGCAGCGGAGGGAAAATAAGTGTTCCTGGACTTTGGACTAGTTTACAGCCAGATAG
TCTAAAAGCAGTGAAACACTGCTCTCTGTAGTCCCTGAAAACAAATGAGACCCATAACAC
ACTTGCCTAAGCTTTTAAAACAGAAATTGGTGCAGCACTAGGAAAGCTGTTCACCTCACC
CCATCTCAATATAGTTTGCTTTTCTTCCTCTTCTGAGACAGCTTTCGTATTGCTGAGCAC
AGTCTCACACACTTTCCTGTTAGACAGTTTGGTTTGCTCTTCTCATCTGTTTAACCCTTC
CCGCGTTCCTATGCGAAAGCCTATAGATGTATTGATGAACACACATGTACACACACACAC
TTGACTATGAAAAATTCCGTTCGCGTTCGCTTTCCTAATCTGTTCAACGATTCATTCATG
AAGCGCGTCGTGAGGCCATTACTGGGGAAGGAATGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-316, - strand, RNAz p=0.682524

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-316, - strand, RNAz p=0.682524

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-511, gnl|bosTau2|chr2 (62148193-62148707)
               

               
               1-511, gnl|Hg17|chr2 (208456048-208455591)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-511, gnl|bosTau2|chr2 (62148193-62148707)
               

               
               1-511, gnl|Hg17|chr2 (208456048-208455591)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               hlv (0.139256)

	1-511, gnl\|bosTau2\|chr2 (62148193-62148707)
	1-511, gnl\|Hg17\|chr2 (208456048-208455591)