Non-Coding RNA Search

Ss1.1-rill307b_g23.5

Sequence:


               
               GCAGAAGCCACAGTGCCGGGGAGTGGCTCCTAACGGCTTACCAAACCACATCATGGCTCC
TGTTTGGAAGTGCCTGCATCTCACCAAGGACCTCCGAGAACAGAAACATTCATACTGGGA
GTTTGCAGAATGGATTCCTTTAGCCTGGAAGTGGCACTTATTATCTGAACTTGAGGCGGC
TCCCTACCTACCCCAGGAGGAGAAGTCTCCGCTGTTTTCTGTGCAGCGTGAAGGACTTCC
TGAAGATGGCACACTCTACCGCATAAACAGATTTAGCTCTATCACAGCCCACCCAGAGCG
CTTGGATGTGTCCTTCTTCACGGGGGGACCGCTCTGGGCTCTGGACTGGTGCCCAGTGCC
TGAAGGGGCAGCAACTTCGCAGTATGTGGCCCTTTTCTCCAGCCCTGACATGAATGAGAC
GCACTCAATGAGCCAGCTTCATTCGGGGCCTGGGCTGCTCCAGCTGTGGGGCCTTGGGAC
TTTGCAGCAGGAAAGCTGTGCTGGCAGCAGAGCCCACTTTGTCTATGGAATTGCTTGTGA
CCACGGCTGCATCTGGGACCTCAAGTTCTGCCCCAGTGGAGCATGGGAACTTCCAGGCAC
CCCTCGGAAGGCTCCTCTCCTACCCCGGTTGGGTCTCCTGGCTCTTGCCTGCTCAGACGG
AAAGGTGCTGCTCTTCAGTCTGCCCCATCCTGAAGCCCTGATGGCTCAGCAGCCTCCGGA
TGCCATGAAGCCTGCCATCTATAAGGTCCAGTGTGTGGCAACCCTTCAGGTGGGGTCCAT
GCAAGCTTCAGAGCCCTCAGAGTGTGGTCAGTGCCTTAGCCTGGCCTGGATGCCCACCCG
GCCCCACCACCACTTGGCTGCTGGATACTATAATGGCATGGTGGTTTTTCTGGAACCTTC
CCACGAACTCCCCCCTGCAGCGGATCCGGCTCTCCGACGGCTCCTTGAAGCTCTACCCTT
TCCAGTGTTTCCTGGCCCATGACCAGGCTGTGCGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAAGCCACAGTGCCGGGGAGTGGCTCCTAACGGCTTACCAAACCACATCATGGCTCC
TGTTTGGAAGTGCCTGCATCTCACCAAGGACCTCCGAGAACAGAAACATTCATACTGGGA
GTTTGCAGAATGGATTCCTTTAGCCTGGAAGTGGCACTTATTATCTGAACTTGAGGCGGC
TCCCTACCTACCCCAGGAGGAGAAGTCTCCGCTGTTTTCTGTGCAGCGTGAAGGACTTCC
TGAAGATGGCACACTCTACCGCATAAACAGATTTAGCTCTATCACAGCCCACCCAGAGCG
CTTGGATGTGTCCTTCTTCACGGGGGGACCGCTCTGGGCTCTGGACTGGTGCCCAGTGCC
TGAAGGGGCAGCAACTTCGCAGTATGTGGCCCTTTTCTCCAGCCCTGACATGAATGAGAC
GCACTCAATGAGCCAGCTTCATTCGGGGCCTGGGCTGCTCCAGCTGTGGGGCCTTGGGAC
TTTGCAGCAGGAAAGCTGTGCTGGCAGCAGAGCCCACTTTGTCTATGGAATTGCTTGTGA
CCACGGCTGCATCTGGGACCTCAAGTTCTGCCCCAGTGGAGCATGGGAACTTCCAGGCAC
CCCTCGGAAGGCTCCTCTCCTACCCCGGTTGGGTCTCCTGGCTCTTGCCTGCTCAGACGG
AAAGGTGCTGCTCTTCAGTCTGCCCCATCCTGAAGCCCTGATGGCTCAGCAGCCTCCGGA
TGCCATGAAGCCTGCCATCTATAAGGTCCAGTGTGTGGCAACCCTTCAGGTGGGGTCCAT
GCAAGCTTCAGAGCCCTCAGAGTGTGGTCAGTGCCTTAGCCTGGCCTGGATGCCCACCCG
GCCCCACCACCACTTGGCTGCTGGATACTATAATGGCATGGTGGTTTTTCTGGAACCTTC
CCACGAACTCCCCCCTGCAGCGGATCCGGCTCTCCGACGGCTCCTTGAAGCTCTACCCTT
TCCAGTGTTTCCTGGCCCATGACCAGGCTGTGCGTA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               269-427, - strand, RNAz p=0.835096
               

               
               744-876, - strand, RNAz p=0.902846
               

               
               775-876, - strand, RNAz p=0.990308

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-427, - strand, RNAz p=0.835096
               

               
               744-876, - strand, RNAz p=0.902846
               

               
               775-876, - strand, RNAz p=0.990308

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               269-498, gnl|bosTau2|chr11 (52003239-52003468)
               

               
               269-498, gnl|Hg17|chr2 (27470945-27470716)
               

               
               269-498, gnl|Mm7|chr5 (30200996-30200767)
               


               
               744-876, gnl|bosTau2|chr11 (52005533-52005665)
               

               
               744-876, gnl|canFam2|chr17 (24279202-24279370)
               

               
               744-876, gnl|danRer3|chr20 (45536781-45536630)
               

               
               744-876, gnl|dasNov1|scaffold_101797 (3391-3224)
               

               
               744-876, gnl|fr1|chrUn (230380015-230379874)
               

               
               744-876, gnl|hg17|chr2 (27468167-27468335)
               

               
               744-876, gnl|Hg17|chr2 (27468304-27468172)
               

               
               744-876, gnl|loxAfr1|scaffold_28902 (7796-7628)
               

               
               744-876, gnl|mm7|chr5 (30198396-30198564)
               

               
               744-876, gnl|Mm7|chr5 (30198533-30198401)
               

               
               744-876, gnl|monDom2|scaffold_1 (148930673-148930509)
               

               
               744-876, gnl|oryCun1|scaffold_203841 (29669-29510)
               

               
               744-876, gnl|panTro1|chr12 (28409434-28409602)
               

               
               744-876, gnl|rheMac2|chr13 (27305105-27305270)
               

               
               744-876, gnl|rn3|chr6 (25191289-25191121)
               

               
               744-876, gnl|tetNig1|chr14 (9225863-9225721)
               

               
               744-876, gnl|xenTro1|scaffold_1743 (85182-85350)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               269-498, gnl|bosTau2|chr11 (52003239-52003468)
               

               
               269-498, gnl|Hg17|chr2 (27470945-27470716)
               

               
               269-498, gnl|Mm7|chr5 (30200996-30200767)
               


               
               744-876, gnl|bosTau2|chr11 (52005533-52005665)
               

               
               744-876, gnl|canFam2|chr17 (24279202-24279370)
               

               
               744-876, gnl|danRer3|chr20 (45536781-45536630)
               

               
               744-876, gnl|dasNov1|scaffold_101797 (3391-3224)
               

               
               744-876, gnl|fr1|chrUn (230380015-230379874)
               

               
               744-876, gnl|hg17|chr2 (27468167-27468335)
               

               
               744-876, gnl|Hg17|chr2 (27468304-27468172)
               

               
               744-876, gnl|loxAfr1|scaffold_28902 (7796-7628)
               

               
               744-876, gnl|mm7|chr5 (30198396-30198564)
               

               
               744-876, gnl|Mm7|chr5 (30198533-30198401)
               

               
               744-876, gnl|monDom2|scaffold_1 (148930673-148930509)
               

               
               744-876, gnl|oryCun1|scaffold_203841 (29669-29510)
               

               
               744-876, gnl|panTro1|chr12 (28409434-28409602)
               

               
               744-876, gnl|rheMac2|chr13 (27305105-27305270)
               

               
               744-876, gnl|rn3|chr6 (25191289-25191121)
               

               
               744-876, gnl|tetNig1|chr14 (9225863-9225721)
               

               
               744-876, gnl|xenTro1|scaffold_1743 (85182-85350)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               ill (0.175593)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ill (0.175593)

	269-427, - strand, RNAz p=0.835096
	744-876, - strand, RNAz p=0.902846
	775-876, - strand, RNAz p=0.990308

	269-498, gnl\|bosTau2\|chr11 (52003239-52003468)
	269-498, gnl\|Hg17\|chr2 (27470945-27470716)
	269-498, gnl\|Mm7\|chr5 (30200996-30200767)

	744-876, gnl\|bosTau2\|chr11 (52005533-52005665)
	744-876, gnl\|canFam2\|chr17 (24279202-24279370)
	744-876, gnl\|danRer3\|chr20 (45536781-45536630)
	744-876, gnl\|dasNov1\|scaffold_101797 (3391-3224)
	744-876, gnl\|fr1\|chrUn (230380015-230379874)
	744-876, gnl\|hg17\|chr2 (27468167-27468335)
	744-876, gnl\|Hg17\|chr2 (27468304-27468172)
	744-876, gnl\|loxAfr1\|scaffold_28902 (7796-7628)
	744-876, gnl\|mm7\|chr5 (30198396-30198564)
	744-876, gnl\|Mm7\|chr5 (30198533-30198401)
	744-876, gnl\|monDom2\|scaffold_1 (148930673-148930509)
	744-876, gnl\|oryCun1\|scaffold_203841 (29669-29510)
	744-876, gnl\|panTro1\|chr12 (28409434-28409602)
	744-876, gnl\|rheMac2\|chr13 (27305105-27305270)
	744-876, gnl\|rn3\|chr6 (25191289-25191121)
	744-876, gnl\|tetNig1\|chr14 (9225863-9225721)
	744-876, gnl\|xenTro1\|scaffold_1743 (85182-85350)