Non-Coding RNA Search

Ss1.1-rill308b_o10.5

Sequence:


               
               AGCGGAGGCTGGAACCGCCGCCCAGCAGCCACTACTGTCTCTACAGCTACCGCGGAAGCA
GATTGGCACAGCAGCAAGCCGACAGTGATGATGGAAGTCCGAGTGGCACAAATACAGAAA
CTCCCTCTGGTGATGATTTCAGCCTCTCCTTGGTGGATACTAATCTACCCTCTGAAGTGG
AGCCCGAGCTGCGCAGTTTCATTGCTAAGCGTCTCTCTAAAGGAGCGGTCTTTGAAGGGC
TGGGTAATGTTGCATCTGTGGAGCTGAGAATTCCAGGTTACCGAGTAGGCTGTTATTACT
GCCTTTTCCAACAAGAAAAACTGCTTCCTCAAACAGCAACAATGGACTCTGAACATAACT
CTTCAGAGTATGTGGTCTGTTTTTTAGGAGGGTCTGAAAAAGGACTTGAGCTTTTCAGGC
TTGAATTGGACAAGTACAGTCAAGGGTTAAAAAATAACATGAACTGTGAGGACAGGGGCG
GGGAGCACCACATACAGTCCTACCTGAGCAGCTGGTTTGAGGACGTCGTATGCCCCATCC
AAAGGGTGGTTCTTCTCTTTCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGGAGGCTGGAACCGCCGCCCAGCAGCCACTACTGTCTCTACAGCTACCGCGGAAGCA
GATTGGCACAGCAGCAAGCCGACAGTGATGATGGAAGTCCGAGTGGCACAAATACAGAAA
CTCCCTCTGGTGATGATTTCAGCCTCTCCTTGGTGGATACTAATCTACCCTCTGAAGTGG
AGCCCGAGCTGCGCAGTTTCATTGCTAAGCGTCTCTCTAAAGGAGCGGTCTTTGAAGGGC
TGGGTAATGTTGCATCTGTGGAGCTGAGAATTCCAGGTTACCGAGTAGGCTGTTATTACT
GCCTTTTCCAACAAGAAAAACTGCTTCCTCAAACAGCAACAATGGACTCTGAACATAACT
CTTCAGAGTATGTGGTCTGTTTTTTAGGAGGGTCTGAAAAAGGACTTGAGCTTTTCAGGC
TTGAATTGGACAAGTACAGTCAAGGGTTAAAAAATAACATGAACTGTGAGGACAGGGGCG
GGGAGCACCACATACAGTCCTACCTGAGCAGCTGGTTTGAGGACGTCGTATGCCCCATCC
AAAGGGTGGTTCTTCTCTTTCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|60654133|gb|AAX29759.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|60654133|gb|AAX29759.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               295-412, - strand, RNAz p=0.684283
               

               
               307-412, + strand, RNAz p=0.940107

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-412, - strand, RNAz p=0.684283
               

               
               307-412, + strand, RNAz p=0.940107

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               267-412, gnl|bosTau2|chr19 (12495082-12494937)
               

               
               267-412, gnl|canFam2|chr9 (43942119-43941936)
               

               
               267-412, gnl|danRer3|chr3 (18667162-18667314)
               

               
               267-412, gnl|dasNov1|scaffold_36013 (12253-12069)
               

               
               267-412, gnl|fr1|chrUn (124100373-124100528)
               

               
               267-412, gnl|galGal2|chr18 (6531744-6531928)
               

               
               267-412, gnl|hg17|chr17 (27689333-27689517)
               

               
               267-412, gnl|Hg17|chr17 (27689485-27689340)
               

               
               267-412, gnl|loxAfr1|scaffold_24134 (34127-34313)
               

               
               267-412, gnl|mm7|chr11 (80455642-80455826)
               

               
               267-412, gnl|Mm7|chr11 (80455794-80455649)
               

               
               267-412, gnl|monDom2|scaffold_44 (11439944-11439744)
               

               
               267-412, gnl|panTro1|chr19 (31182427-31182611)
               

               
               267-412, gnl|rheMac2|chr16 (27677384-27677568)
               

               
               267-412, gnl|rn3|chr10 (68609695-68609879)
               

               
               267-412, gnl|tetNig1|chr3 (8602258-8602413)
               

               
               267-412, gnl|xenTro1|scaffold_2028 (5989-6149)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               267-412, gnl|bosTau2|chr19 (12495082-12494937)
               

               
               267-412, gnl|canFam2|chr9 (43942119-43941936)
               

               
               267-412, gnl|danRer3|chr3 (18667162-18667314)
               

               
               267-412, gnl|dasNov1|scaffold_36013 (12253-12069)
               

               
               267-412, gnl|fr1|chrUn (124100373-124100528)
               

               
               267-412, gnl|galGal2|chr18 (6531744-6531928)
               

               
               267-412, gnl|hg17|chr17 (27689333-27689517)
               

               
               267-412, gnl|Hg17|chr17 (27689485-27689340)
               

               
               267-412, gnl|loxAfr1|scaffold_24134 (34127-34313)
               

               
               267-412, gnl|mm7|chr11 (80455642-80455826)
               

               
               267-412, gnl|Mm7|chr11 (80455794-80455649)
               

               
               267-412, gnl|monDom2|scaffold_44 (11439944-11439744)
               

               
               267-412, gnl|panTro1|chr19 (31182427-31182611)
               

               
               267-412, gnl|rheMac2|chr16 (27677384-27677568)
               

               
               267-412, gnl|rn3|chr10 (68609695-68609879)
               

               
               267-412, gnl|tetNig1|chr3 (8602258-8602413)
               

               
               267-412, gnl|xenTro1|scaffold_2028 (5989-6149)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nms (0.213858)
               

               
               ill (0.175593)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               ill (0.175593)
               

               
               cly (0.120642)

	295-412, - strand, RNAz p=0.684283
	307-412, + strand, RNAz p=0.940107

	267-412, gnl\|bosTau2\|chr19 (12495082-12494937)
	267-412, gnl\|canFam2\|chr9 (43942119-43941936)
	267-412, gnl\|danRer3\|chr3 (18667162-18667314)
	267-412, gnl\|dasNov1\|scaffold_36013 (12253-12069)
	267-412, gnl\|fr1\|chrUn (124100373-124100528)
	267-412, gnl\|galGal2\|chr18 (6531744-6531928)
	267-412, gnl\|hg17\|chr17 (27689333-27689517)
	267-412, gnl\|Hg17\|chr17 (27689485-27689340)
	267-412, gnl\|loxAfr1\|scaffold_24134 (34127-34313)
	267-412, gnl\|mm7\|chr11 (80455642-80455826)
	267-412, gnl\|Mm7\|chr11 (80455794-80455649)
	267-412, gnl\|monDom2\|scaffold_44 (11439944-11439744)
	267-412, gnl\|panTro1\|chr19 (31182427-31182611)
	267-412, gnl\|rheMac2\|chr16 (27677384-27677568)
	267-412, gnl\|rn3\|chr10 (68609695-68609879)
	267-412, gnl\|tetNig1\|chr3 (8602258-8602413)
	267-412, gnl\|xenTro1\|scaffold_2028 (5989-6149)