Non-Coding RNA Search

Ss1.1-rill310b_c6.5

Sequence:


               
               GTGCCCACAACTTCTTTGATGAACTGCGATGTCCTGGAACCCAGCTCCCCAACAACCGCC
CGCTTCCCCCTCTCTTCAATTTCAGTCCTGGCGAACTCACCATCCAACCGTCTCTCAACG
CCATCCTCATCCCTCCTCACTTGAGATCCCCGGCAGGCACTGCCTCCCTCACCTCATCCT
CACAAGCTTTAAGTGAGACTCCGACCGGCCCGGACTGGCAGTCGACTGATGCCACAACTC
CTCTCACTAACTCTTCCTGAGGGCGCCACCAACTACCCTTCCATCTGGGAGCCCCAAGTG
GGGCTGGGAAGGGGGGGCCACAGCCCATCAAGCTCCTGCCCTGACTGGGCCCCTAGACTA
GAGGGCAGAGGTAAATGAGTCCCTGTCCCCACCTCCAGTCCCTCCCTCACCAGCCTTACC
CCTGTGGTGGGCTTTTTAAGAGGATTTTAACTGGTTGTGGGGAGGGAAGAGAAGGAAGGA
TGGGGGTGGGGGGCATGAGGACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCCCACAACTTCTTTGATGAACTGCGATGTCCTGGAACCCAGCTCCCCAACAACCGCC
CGCTTCCCCCTCTCTTCAATTTCAGTCCTGGCGAACTCACCATCCAACCGTCTCTCAACG
CCATCCTCATCCCTCCTCACTTGAGATCCCCGGCAGGCACTGCCTCCCTCACCTCATCCT
CACAAGCTTTAAGTGAGACTCCGACCGGCCCGGACTGGCAGTCGACTGATGCCACAACTC
CTCTCACTAACTCTTCCTGAGGGCGCCACCAACTACCCTTCCATCTGGGAGCCCCAAGTG
GGGCTGGGAAGGGGGGGCCACAGCCCATCAAGCTCCTGCCCTGACTGGGCCCCTAGACTA
GAGGGCAGAGGTAAATGAGTCCCTGTCCCCACCTCCAGTCCCTCCCTCACCAGCCTTACC
CCTGTGGTGGGCTTTTTAAGAGGATTTTAACTGGTTGTGGGGAGGGAAGAGAAGGAAGGA
TGGGGGTGGGGGGCATGAGGACCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               225-486, - strand, RNAz p=0.998953

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-486, - strand, RNAz p=0.998953

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               380-496, - strand, RNAmicro p=0.999386
               

               
               309-411, + strand, RNAmicro p=0.974756

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               380-496, - strand, RNAmicro p=0.999386
               

               
               309-411, + strand, RNAmicro p=0.974756

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               228-476, CJ448019 macaque brain cDNA library QflA Macaca fascicularis cDNA 
(dbj|CJ448019.1|), blast E-value=0, identity=90.59% 
               

               
               228-476, AL545136 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA 
(emb|AL545136.3|), blast E-value=0, identity=90.59% 
               

               
               228-476, AL575364 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA 
(emb|AL575364.3|), blast E-value=0, identity=90.59% 
               

               
               228-476, BX464022 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX464022.2|), blast E-value=0, identity=90.59% 
               

               
               228-476, 17000600007841 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN310126.1|), blast E-value=0, identity=90.59% 
               

               
               228-476, 17000600010124 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN310128.1|), blast E-value=0, identity=90.59%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               228-476, CJ448019 macaque brain cDNA library QflA Macaca fascicularis cDNA 
(dbj|CJ448019.1|), blast E-value=0, identity=90.59% 
               

               
               228-476, AL545136 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA 
(emb|AL545136.3|), blast E-value=0, identity=90.59% 
               

               
               228-476, AL575364 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA 
(emb|AL575364.3|), blast E-value=0, identity=90.59% 
               

               
               228-476, BX464022 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX464022.2|), blast E-value=0, identity=90.59% 
               

               
               228-476, 17000600007841 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN310126.1|), blast E-value=0, identity=90.59% 
               

               
               228-476, 17000600010124 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN310128.1|), blast E-value=0, identity=90.59%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               185-486, gnl|bosTau2|chr18 (44948371-44948071)
               

               
               185-486, gnl|Hg17|chr19 (47426861-47426550)
               

               
               185-486, gnl|Mm7|chr7 (22017999-22017691)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               185-486, gnl|bosTau2|chr18 (44948371-44948071)
               

               
               185-486, gnl|Hg17|chr19 (47426861-47426550)
               

               
               185-486, gnl|Mm7|chr7 (22017999-22017691)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.351185)
               

               
               jej (0.197844)
               

               
               nje (0.16592)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               jej (0.197844)
               

               
               nje (0.16592)

	380-496, - strand, RNAmicro p=0.999386
	309-411, + strand, RNAmicro p=0.974756

	228-476, CJ448019 macaque brain cDNA library QflA Macaca fascicularis cDNA (dbj\|CJ448019.1\|), blast E-value=0, identity=90.59%
	228-476, AL545136 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA (emb\|AL545136.3\|), blast E-value=0, identity=90.59%
	228-476, AL575364 Homo sapiens PLACENTA COT 25-NORMALIZED Homo sapiens cDNA (emb\|AL575364.3\|), blast E-value=0, identity=90.59%
	228-476, BX464022 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb\|BX464022.2\|), blast E-value=0, identity=90.59%
	228-476, 17000600007841 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN310126.1\|), blast E-value=0, identity=90.59%
	228-476, 17000600010124 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence (gb\|CN310128.1\|), blast E-value=0, identity=90.59%

	185-486, gnl\|bosTau2\|chr18 (44948371-44948071)
	185-486, gnl\|Hg17\|chr19 (47426861-47426550)
	185-486, gnl\|Mm7\|chr7 (22017999-22017691)