Ss1.1-rill310b_i5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCTGGGTTCTTGGAGCGACAGCTTTGATCTTCCCCACCCAGGCCGGCGGCCCCGCAC GCAGTAAACTCAGCTATTTATGAATGAGGTTGCTGTGAGGATTGGACAAGTTAACACCTG TACATTTTTGGAATGATGCCAGGCACCTAGTGAGTGCGGGAGTATCTGACAGGCTTCCAT AAGCGGAAGGTGGAGCGGAAGAAAGCGGCCATTGAGGAGATCAAGCAGCGGCTTAAGGAG GAGCAGAAAAAGCTCCGGGAGGAGCGCCACCAGGAATACTTGAAGATGCTGGCAGAGAGA GAGGAAGCTCTGGAGGAGGCAGACGAACTGGACCGGCTAGTGACAGCAAAGACAGAGTCG GTGCAGTATGACCACCCCAACCACACTGTCACCGTGACCACCATCAGCGACCTGGACCTC TCGGGGGCCCGGCTGCTCGGACTAACTCCGCCTGAGCAAGGGGCTGGGCATGGGCCCGAG GAGGAGACATCGTCTGTGGAGAAGCCAAGCAGAGCCTTGCCCAGGAAGTCCAGAGACCCC CTGCTGTCCCAGCGGATCTCATCTCTCACAGCCTCGCTGCATGCACATAGTCGCAAAAAG GTCAAGAGGAAACACCCCCGCCGGGCCCAGGAGTCCACCAAGAAGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCTGGGTTCTTGGAGCGACAGCTTTGATCTTCCCCACCCAGGCCGGCGGCCCCGCAC GCAGTAAACTCAGCTATTTATGAATGAGGTTGCTGTGAGGATTGGACAAGTTAACACCTG TACATTTTTGGAATGATGCCAGGCACCTAGTGAGTGCGGGAGTATCTGACAGGCTTCCAT AAGCGGAAGGTGGAGCGGAAGAAAGCGGCCATTGAGGAGATCAAGCAGCGGCTTAAGGAG GAGCAGAAAAAGCTCCGGGAGGAGCGCCACCAGGAATACTTGAAGATGCTGGCAGAGAGA GAGGAAGCTCTGGAGGAGGCAGACGAACTGGACCGGCTAGTGACAGCAAAGACAGAGTCG GTGCAGTATGACCACCCCAACCACACTGTCACCGTGACCACCATCAGCGACCTGGACCTC TCGGGGGCCCGGCTGCTCGGACTAACTCCGCCTGAGCAAGGGGCTGGGCATGGGCCCGAG GAGGAGACATCGTCTGTGGAGAAGCCAAGCAGAGCCTTGCCCAGGAAGTCCAGAGACCCC CTGCTGTCCCAGCGGATCTCATCTCTCACAGCCTCGCTGCATGCACATAGTCGCAAAAAG GTCAAGAGGAAACACCCCCGCCGGGCCCAGGAGTCCACCAAGAAGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 158-264, + strand, RNAz p=0.992413 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 158-264, + strand, RNAz p=0.992413 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 158-264, gnl|bosTau2|chr5 (67282296-67282190) | |
| 158-264, gnl|Hg17|chr22 (36408416-36408522) | |
| 158-264, gnl|Mm7|chr15 (79019430-79019536) | |
| 313-465, gnl|bosTau2|chr5 (67281354-67281203) | |
| 313-465, gnl|canFam2|chr10 (29996732-29996563) | |
| 313-465, gnl|danRer3|chrNA (123853111-123852962) | |
| 313-465, gnl|echTel1|scaffold_311096 (2910-2741) | |
| 313-465, gnl|fr1|chrUn (78581991-78581852) | |
| 313-465, gnl|galGal2|chr1 (47854388-47854220) | |
| 313-465, gnl|hg17|chr22 (36409340-36409508) | |
| 313-465, gnl|Hg17|chr22 (36409356-36409507) | |
| 313-465, gnl|loxAfr1|scaffold_14715 (25797-25628) | |
| 313-465, gnl|mm7|chr15 (79020744-79020911) | |
| 313-465, gnl|Mm7|chr15 (79020759-79020910) | |
| 313-465, gnl|monDom2|scaffold_34 (102196-102038) | |
| 313-465, gnl|oryCun1|scaffold_177347 (9-177) | |
| 313-465, gnl|panTro1|chr23_random (10785504-10785336) | |
| 313-465, gnl|rheMac2|chr10 (81606813-81606981) | |
| 313-465, gnl|rn3|chr7 (116939063-116939230) | |
| 313-465, gnl|tetNig1|chrUn_random (38370900-38371059) | |
| 547-648, gnl|bosTau2|chr5 (67279527-67279426) | |
| 547-648, gnl|canFam2|chr10 (29994799-29994728) | |
| 547-648, gnl|dasNov1|scaffold_136639 (1330-1401) | |
| 547-648, gnl|echTel1|scaffold_311096 (1418-1349) | |
| 547-648, gnl|fr1|chrUn (78581487-78581410) | |
| 547-648, gnl|galGal2|chr1 (47852788-47852718) | |
| 547-648, gnl|hg17|chr22 (36411670-36411741) | |
| 547-648, gnl|Hg17|chr22 (36411673-36411771) | |
| 547-648, gnl|loxAfr1|scaffold_14715 (24674-24603) | |
| 547-648, gnl|mm7|chr15 (79023401-79023472) | |
| 547-648, gnl|Mm7|chr15 (79023404-79023505) | |
| 547-648, gnl|monDom2|scaffold_34 (100587-100526) | |
| 547-648, gnl|oryCun1|scaffold_177347 (1355-1426) | |
| 547-648, gnl|panTro1|chr23_random (10845098-10845027) | |
| 547-648, gnl|rheMac2|chr10 (81609042-81609113) | |
| 547-648, gnl|rn3|chr7 (116941125-116941196) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-264, gnl|bosTau2|chr5 (67282296-67282190) | |
| 158-264, gnl|Hg17|chr22 (36408416-36408522) | |
| 158-264, gnl|Mm7|chr15 (79019430-79019536) | |
| 313-465, gnl|bosTau2|chr5 (67281354-67281203) | |
| 313-465, gnl|canFam2|chr10 (29996732-29996563) | |
| 313-465, gnl|danRer3|chrNA (123853111-123852962) | |
| 313-465, gnl|echTel1|scaffold_311096 (2910-2741) | |
| 313-465, gnl|fr1|chrUn (78581991-78581852) | |
| 313-465, gnl|galGal2|chr1 (47854388-47854220) | |
| 313-465, gnl|hg17|chr22 (36409340-36409508) | |
| 313-465, gnl|Hg17|chr22 (36409356-36409507) | |
| 313-465, gnl|loxAfr1|scaffold_14715 (25797-25628) | |
| 313-465, gnl|mm7|chr15 (79020744-79020911) | |
| 313-465, gnl|Mm7|chr15 (79020759-79020910) | |
| 313-465, gnl|monDom2|scaffold_34 (102196-102038) | |
| 313-465, gnl|oryCun1|scaffold_177347 (9-177) | |
| 313-465, gnl|panTro1|chr23_random (10785504-10785336) | |
| 313-465, gnl|rheMac2|chr10 (81606813-81606981) | |
| 313-465, gnl|rn3|chr7 (116939063-116939230) | |
| 313-465, gnl|tetNig1|chrUn_random (38370900-38371059) | |
| 547-648, gnl|bosTau2|chr5 (67279527-67279426) | |
| 547-648, gnl|canFam2|chr10 (29994799-29994728) | |
| 547-648, gnl|dasNov1|scaffold_136639 (1330-1401) | |
| 547-648, gnl|echTel1|scaffold_311096 (1418-1349) | |
| 547-648, gnl|fr1|chrUn (78581487-78581410) | |
| 547-648, gnl|galGal2|chr1 (47852788-47852718) | |
| 547-648, gnl|hg17|chr22 (36411670-36411741) | |
| 547-648, gnl|Hg17|chr22 (36411673-36411771) | |
| 547-648, gnl|loxAfr1|scaffold_14715 (24674-24603) | |
| 547-648, gnl|mm7|chr15 (79023401-79023472) | |
| 547-648, gnl|Mm7|chr15 (79023404-79023505) | |
| 547-648, gnl|monDom2|scaffold_34 (100587-100526) | |
| 547-648, gnl|oryCun1|scaffold_177347 (1355-1426) | |
| 547-648, gnl|panTro1|chr23_random (10845098-10845027) | |
| 547-648, gnl|rheMac2|chr10 (81609042-81609113) | |
| 547-648, gnl|rn3|chr7 (116941125-116941196) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| jca (0.11396) |