Ss1.1-rill312b_j19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGTTTGCTGCCAATTGATGGAGCAAATGACCTCTTTTTTCAACCACCCCCACTGACTC CTACCTCCAAAGTTTATACTATCAGACCATATTTTCCTAAAGATGAGGCTTCCGTATACA AGATTTGCAGAGAAATGTATGACGATGGAGTGGGTTTACCTTTTCAAAGTCAGCCTGACC TTATTGGAGACAAGTTAGTAGGAGGGCTGCTTTCCCTCAGCCTGGATTACTGTTTTGTTC TAGAAGATGAAGATGGCATATGTGGTTATGCCCTGGGCACTGTAGATGTGACCCCTTTCA TTAAAAAATGTAAAATTTCCTGGATTCCCTTCATGCAGGAGAAGTATACCAAGCCAAATG GCGACAAAGAACTCTCTGAGGCCGAGAAAATCATGTTGAGTTTCCATGAAGAGCAGGAAG TGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAGATGGATATTCACAAAA AAGTAACTGACCCAAGTGTAGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGG CTAATGGTTCCCGAGGGGCTTTCTGTGAAGTGAGACCTGATGATAAAAGAATTTTGGAAT TTTACAGCAAGTTAGGCTGTTTTGAGATTGCAAAAATGGAAGGATTTCCAAAGGATGTGG TTATACTTGGCCGGAGCCTGTGATGTTTGTTGGCACTATGAACTGTCAGAAAGTCTCTTA ACTTCACCTGGTGGGTGGTGGTTGGGGTCTTCATACAGTTCAGCCTCTGGAGTGGCAACA CATTGGCTGATTAGGATTGAAAACAAAGAAGACTGTGTAAAACTCACTCATCATACTTAG AGAGACTACTCACTGGTTGGAAGAAGATAGTATTGCTGCAAATCCTGTATGAAAGAGATG TGGGCCTCCTTTTTGAGTCTTGTGTTAGATGCCAAGACCTCTTACATGGGCTTATAGGGA GGGGTCTTCAATAAATGTAGTCAGCACTGAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGTTTGCTGCCAATTGATGGAGCAAATGACCTCTTTTTTCAACCACCCCCACTGACTC CTACCTCCAAAGTTTATACTATCAGACCATATTTTCCTAAAGATGAGGCTTCCGTATACA AGATTTGCAGAGAAATGTATGACGATGGAGTGGGTTTACCTTTTCAAAGTCAGCCTGACC TTATTGGAGACAAGTTAGTAGGAGGGCTGCTTTCCCTCAGCCTGGATTACTGTTTTGTTC TAGAAGATGAAGATGGCATATGTGGTTATGCCCTGGGCACTGTAGATGTGACCCCTTTCA TTAAAAAATGTAAAATTTCCTGGATTCCCTTCATGCAGGAGAAGTATACCAAGCCAAATG GCGACAAAGAACTCTCTGAGGCCGAGAAAATCATGTTGAGTTTCCATGAAGAGCAGGAAG TGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAGATGGATATTCACAAAA AAGTAACTGACCCAAGTGTAGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGG CTAATGGTTCCCGAGGGGCTTTCTGTGAAGTGAGACCTGATGATAAAAGAATTTTGGAAT TTTACAGCAAGTTAGGCTGTTTTGAGATTGCAAAAATGGAAGGATTTCCAAAGGATGTGG TTATACTTGGCCGGAGCCTGTGATGTTTGTTGGCACTATGAACTGTCAGAAAGTCTCTTA ACTTCACCTGGTGGGTGGTGGTTGGGGTCTTCATACAGTTCAGCCTCTGGAGTGGCAACA CATTGGCTGATTAGGATTGAAAACAAAGAAGACTGTGTAAAACTCACTCATCATACTTAG AGAGACTACTCACTGGTTGGAAGAAGATAGTATTGCTGCAAATCCTGTATGAAAGAGATG TGGGCCTCCTTTTTGAGTCTTGTGTTAGATGCCAAGACCTCTTACATGGGCTTATAGGGA GGGGTCTTCAATAAATGTAGTCAGCACTGAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-119, gnl|bosTau2|chr26 (16657800-16657683) | |
| 1-119, gnl|Hg17|chr10 (103542692-103542570) | |
| 1-119, gnl|Mm7|chr19 (45658113-45657990) | |
| 191-391, gnl|bosTau2|chr26 (16656490-16656290) | |
| 191-391, gnl|canFam2|chr28 (17379115-17379315) | |
| 191-391, gnl|danRer3|chr7 (11733208-11733006) | |
| 191-391, gnl|dasNov1|scaffold_206542 (1170-970) | |
| 191-391, gnl|echTel1|scaffold_107709 (832-632) | |
| 191-391, gnl|fr1|chrUn (16267398-16267198) | |
| 191-391, gnl|galGal2|chr6 (21803981-21803785) | |
| 191-391, gnl|hg17|chr10 (103540639-103540839) | |
| 191-391, gnl|Hg17|chr10 (103540838-103540638) | |
| 191-391, gnl|mm7|chr19 (45654804-45655004) | |
| 191-391, gnl|Mm7|chr19 (45655003-45654803) | |
| 191-391, gnl|monDom2|scaffold_14 (61683215-61683016) | |
| 191-391, gnl|panTro1|chr8 (105297062-105297262) | |
| 191-391, gnl|rheMac2|chr9 (101426235-101426435) | |
| 191-391, gnl|rn3|chr1 (251233775-251233975) | |
| 191-391, gnl|tetNig1|chr17 (4893802-4894000) | |
| 191-391, gnl|xenTro1|scaffold_708 (420036-420236) | |
| 546-989, gnl|bosTau2|chr26 (16652858-16652414) | |
| 546-989, gnl|Hg17|chr10 (103536335-103535890) | |
| 546-989, gnl|Mm7|chr19 (45649184-45648741) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-119, gnl|bosTau2|chr26 (16657800-16657683) | |
| 1-119, gnl|Hg17|chr10 (103542692-103542570) | |
| 1-119, gnl|Mm7|chr19 (45658113-45657990) | |
| 191-391, gnl|bosTau2|chr26 (16656490-16656290) | |
| 191-391, gnl|canFam2|chr28 (17379115-17379315) | |
| 191-391, gnl|danRer3|chr7 (11733208-11733006) | |
| 191-391, gnl|dasNov1|scaffold_206542 (1170-970) | |
| 191-391, gnl|echTel1|scaffold_107709 (832-632) | |
| 191-391, gnl|fr1|chrUn (16267398-16267198) | |
| 191-391, gnl|galGal2|chr6 (21803981-21803785) | |
| 191-391, gnl|hg17|chr10 (103540639-103540839) | |
| 191-391, gnl|Hg17|chr10 (103540838-103540638) | |
| 191-391, gnl|mm7|chr19 (45654804-45655004) | |
| 191-391, gnl|Mm7|chr19 (45655003-45654803) | |
| 191-391, gnl|monDom2|scaffold_14 (61683215-61683016) | |
| 191-391, gnl|panTro1|chr8 (105297062-105297262) | |
| 191-391, gnl|rheMac2|chr9 (101426235-101426435) | |
| 191-391, gnl|rn3|chr1 (251233775-251233975) | |
| 191-391, gnl|tetNig1|chr17 (4893802-4894000) | |
| 191-391, gnl|xenTro1|scaffold_708 (420036-420236) | |
| 546-989, gnl|bosTau2|chr26 (16652858-16652414) | |
| 546-989, gnl|Hg17|chr10 (103536335-103535890) | |
| 546-989, gnl|Mm7|chr19 (45649184-45648741) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| ill (0.526778) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| tra (0.246184) | |
| pan (0.23596) | |
| med (0.232504) | |
| fcc (0.197785) | |
| col (0.195008) | |
| eye (0.170503) | |
| nje (0.16592) | |
| lin (0.145603) | |
| csk (0.140746) | |
| kid (0.129735) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.526778) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| tra (0.246184) | |
| pan (0.23596) | |
| med (0.232504) | |
| fcc (0.197785) | |
| col (0.195008) | |
| eye (0.170503) | |
| nje (0.16592) | |
| lin (0.145603) | |
| csk (0.140746) | |
| kid (0.129735) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| ldo (0.0970026) |