Non-Coding RNA Search

Ss1.1-rill313b_f13.5

Sequence:


               
               CTTGGGATGATGATGAGCCCTGGGGGCCATGGACCGGAAATGGCAGCTTCTGGCTGCCTG
CAGTGCAGCCCTTCCAGGAGGGCACCTATCTGGCCACTGTACACCTGCCATACCTGCAAG
GGCAGGTTGCCATGGATCTTGCTGTACAGAAGTCCCCCAAAGTGTCCCTGACACCAGCGC
CCCTTGTGTGGGCTGCCCCCGGAGAGGCTCCTCCAGAGTTGCTCTGCCTGGTGTCTCACT
TCTACCCCTCCGAGGGCCTGGAGGTGGAGTGGGAGCTCCGGGGTGGCCCACAGGGTCGCT
TTCAGAAGGCCGAGGGGCAGAGTTGGCACTCTGCCCTGAGCCACCATGCAGATGGCTCTG
TCAGCCTGTCCGCACACCTGCAGCTGCCCCCAGTCACCACCGAACAGCATGGGGCCCGCT
ATGCCTGCAGAGTCCACCACCCGAGCCTGCCTGCCTTGGGGCGCAGGTCTGAGATCACCC
TGCAGGTGGCAGGTCTCTCGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGGATGATGATGAGCCCTGGGGGCCATGGACCGGAAATGGCAGCTTCTGGCTGCCTG
CAGTGCAGCCCTTCCAGGAGGGCACCTATCTGGCCACTGTACACCTGCCATACCTGCAAG
GGCAGGTTGCCATGGATCTTGCTGTACAGAAGTCCCCCAAAGTGTCCCTGACACCAGCGC
CCCTTGTGTGGGCTGCCCCCGGAGAGGCTCCTCCAGAGTTGCTCTGCCTGGTGTCTCACT
TCTACCCCTCCGAGGGCCTGGAGGTGGAGTGGGAGCTCCGGGGTGGCCCACAGGGTCGCT
TTCAGAAGGCCGAGGGGCAGAGTTGGCACTCTGCCCTGAGCCACCATGCAGATGGCTCTG
TCAGCCTGTCCGCACACCTGCAGCTGCCCCCAGTCACCACCGAACAGCATGGGGCCCGCT
ATGCCTGCAGAGTCCACCACCCGAGCCTGCCTGCCTTGGGGCGCAGGTCTGAGATCACCC
TGCAGGTGGCAGGTCTCTCGGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26344049|dbj|BAC35681.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26344049|dbj|BAC35681.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               186-425, + strand, RNAz p=0.930378
               

               
               273-472, - strand, RNAz p=0.959731

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-425, + strand, RNAz p=0.930378
               

               
               273-472, - strand, RNAz p=0.959731

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_172208, +
               

               
               5' of NM_172208, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_172208, +
               

               
               5' of NM_172208, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               147-494, gnl|bosTau2|chr23 (5839194-5838848)
               

               
               147-494, gnl|canFam2|chr12 (5745881-5746501)
               

               
               147-494, gnl|echTel1|scaffold_157830 (4100-3531)
               

               
               147-494, gnl|galGal2|chr16 (177694-178382)
               

               
               147-494, gnl|hg17|chr6 (33379753-33380375)
               

               
               147-494, gnl|Hg17|chr6 (33380396-33380050)
               

               
               147-494, gnl|mm7|chr17 (32004653-32004058)
               

               
               147-494, gnl|Mm7|chr17 (32004035-32004381)
               

               
               147-494, gnl|monDom2|scaffold_42 (15127786-15127123)
               

               
               147-494, gnl|oryCun1|scaffold_158988 (3278-3858)
               

               
               147-494, gnl|panTro1|chr5 (33825118-33825740)
               

               
               147-494, gnl|rheMac2|chr4 (33017871-33018495)
               

               
               147-494, gnl|rn3|chr20 (5111974-5112567)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-494, gnl|bosTau2|chr23 (5839194-5838848)
               

               
               147-494, gnl|canFam2|chr12 (5745881-5746501)
               

               
               147-494, gnl|echTel1|scaffold_157830 (4100-3531)
               

               
               147-494, gnl|galGal2|chr16 (177694-178382)
               

               
               147-494, gnl|hg17|chr6 (33379753-33380375)
               

               
               147-494, gnl|Hg17|chr6 (33380396-33380050)
               

               
               147-494, gnl|mm7|chr17 (32004653-32004058)
               

               
               147-494, gnl|Mm7|chr17 (32004035-32004381)
               

               
               147-494, gnl|monDom2|scaffold_42 (15127786-15127123)
               

               
               147-494, gnl|oryCun1|scaffold_158988 (3278-3858)
               

               
               147-494, gnl|panTro1|chr5 (33825118-33825740)
               

               
               147-494, gnl|rheMac2|chr4 (33017871-33018495)
               

               
               147-494, gnl|rn3|chr20 (5111974-5112567)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               eep (0.122564)

	186-425, + strand, RNAz p=0.930378
	273-472, - strand, RNAz p=0.959731

	147-494, gnl\|bosTau2\|chr23 (5839194-5838848)
	147-494, gnl\|canFam2\|chr12 (5745881-5746501)
	147-494, gnl\|echTel1\|scaffold_157830 (4100-3531)
	147-494, gnl\|galGal2\|chr16 (177694-178382)
	147-494, gnl\|hg17\|chr6 (33379753-33380375)
	147-494, gnl\|Hg17\|chr6 (33380396-33380050)
	147-494, gnl\|mm7\|chr17 (32004653-32004058)
	147-494, gnl\|Mm7\|chr17 (32004035-32004381)
	147-494, gnl\|monDom2\|scaffold_42 (15127786-15127123)
	147-494, gnl\|oryCun1\|scaffold_158988 (3278-3858)
	147-494, gnl\|panTro1\|chr5 (33825118-33825740)
	147-494, gnl\|rheMac2\|chr4 (33017871-33018495)
	147-494, gnl\|rn3\|chr20 (5111974-5112567)