Non-Coding RNA Search

Ss1.1-rill313b_f24.5

Sequence:


               
               GGCCATCCGAACTCTCGGACCCTGAACAGGTGCCGCCGTCCCCTTCCCCGCCCAGCTTCT
CCCCTCCTGCACCCACCTCTGCCGTGGATGGGTCCCCTGCACCTGTCTTGCCGGGGGACC
AAGACCTGGACTGCCCTGCACCCCAGGACATGGTAGCACCTCGACTCAGGCCGATGCGTC
CACCGCCTCCCCCGCCAGCTAAAGCCCCGGATCCTGGCCACCCGGGTTCCCTCACCTGAA
GCCAGGGGGAATCACTGTCCCTACAGTGACGCTGGTGGCCCTATCTCCGTGCCATCAGAG
ACACCCTCCCCGCCGCCACCAATGATCCAGAGCGCCACAGTGGAAAGCCAGACTCTCCCC
AATTTCCATTCTCACCTTCAGGGGTCGACGCGTCCCCCTCCTCCGTTTCTGAGGCTGGGA
CCCACTCCTTCCCCCCATCACCTTCCTGCCATCTCTAGGGCTGGACCTACCCTTTCTCTT
CTGCCACCGCCCCATGCCTAGGGTGAAATACCCTGGAATCTCTGGGGCTGGAGCTCATCC
CCCAAAGTCTGGAGTAGCTCTGGCTCATTCATGTCTCCGCCCTGGTTCTGGGAGCCACCC
CACTCCAGATGCCTGAGCCGCTGGGTTGGGGGCTGGGATGGGGGCAGGCCTGTCACAAGG
AGCTGGAGCCAGTATGCACAGCAGCTGTAATAGTCTGAGCGGATTTATTGACAGTGAATA
AAGGGCAGGAAGCCCAAGCCAGGCCTGGGCCTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCATCCGAACTCTCGGACCCTGAACAGGTGCCGCCGTCCCCTTCCCCGCCCAGCTTCT
CCCCTCCTGCACCCACCTCTGCCGTGGATGGGTCCCCTGCACCTGTCTTGCCGGGGGACC
AAGACCTGGACTGCCCTGCACCCCAGGACATGGTAGCACCTCGACTCAGGCCGATGCGTC
CACCGCCTCCCCCGCCAGCTAAAGCCCCGGATCCTGGCCACCCGGGTTCCCTCACCTGAA
GCCAGGGGGAATCACTGTCCCTACAGTGACGCTGGTGGCCCTATCTCCGTGCCATCAGAG
ACACCCTCCCCGCCGCCACCAATGATCCAGAGCGCCACAGTGGAAAGCCAGACTCTCCCC
AATTTCCATTCTCACCTTCAGGGGTCGACGCGTCCCCCTCCTCCGTTTCTGAGGCTGGGA
CCCACTCCTTCCCCCCATCACCTTCCTGCCATCTCTAGGGCTGGACCTACCCTTTCTCTT
CTGCCACCGCCCCATGCCTAGGGTGAAATACCCTGGAATCTCTGGGGCTGGAGCTCATCC
CCCAAAGTCTGGAGTAGCTCTGGCTCATTCATGTCTCCGCCCTGGTTCTGGGAGCCACCC
CACTCCAGATGCCTGAGCCGCTGGGTTGGGGGCTGGGATGGGGGCAGGCCTGTCACAAGG
AGCTGGAGCCAGTATGCACAGCAGCTGTAATAGTCTGAGCGGATTTATTGACAGTGAATA
AAGGGCAGGAAGCCCAAGCCAGGCCTGGGCCTCTTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               186-422, - strand, RNAz p=0.998957
               

               
               333-644, + strand, RNAz p=0.995353
               

               
               430-529, - strand, RNAz p=0.984821

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-422, - strand, RNAz p=0.998957
               

               
               333-644, + strand, RNAz p=0.995353
               

               
               430-529, - strand, RNAz p=0.984821

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               186-241, DA568838 HEMBA1 Homo sapiens cDNA clone HEMBA1001655 5', mRNA 
(dbj|DA568838.1|), blast E-value=0.000000000004, identity=92.86% 
               

               
               186-241, DA960144 SPLEN2 Homo sapiens cDNA clone SPLEN2040455 5', mRNA 
(dbj|DA960144.1|), blast E-value=0.000000000004, identity=92.86% 
               

               
               187-253, 113139 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW669656.1|), 
blast E-value=3e-16, identity=92.54% 
               

               
               186-241, AGENCOURT_10437090 NIH_MGC_109 Homo sapiens cDNA clone 
(gb|BU849451.1|), blast E-value=0.000000000004, identity=92.86% 
               

               
               186-241, 17000532631294 GRN_ES Homo sapiens cDNA 5', mRNA sequence 
(gb|CN398068.1|), blast E-value=0.000000000004, identity=92.86% 
               

               
               186-253, 010128BEMN056747HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY175488.1|), blast E-value=3e-19, identity=94.12%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               186-241, DA568838 HEMBA1 Homo sapiens cDNA clone HEMBA1001655 5', mRNA 
(dbj|DA568838.1|), blast E-value=0.000000000004, identity=92.86% 
               

               
               186-241, DA960144 SPLEN2 Homo sapiens cDNA clone SPLEN2040455 5', mRNA 
(dbj|DA960144.1|), blast E-value=0.000000000004, identity=92.86% 
               

               
               187-253, 113139 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW669656.1|), 
blast E-value=3e-16, identity=92.54% 
               

               
               186-241, AGENCOURT_10437090 NIH_MGC_109 Homo sapiens cDNA clone 
(gb|BU849451.1|), blast E-value=0.000000000004, identity=92.86% 
               

               
               186-241, 17000532631294 GRN_ES Homo sapiens cDNA 5', mRNA sequence 
(gb|CN398068.1|), blast E-value=0.000000000004, identity=92.86% 
               

               
               186-253, 010128BEMN056747HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY175488.1|), blast E-value=3e-19, identity=94.12%

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of BC047016, +
               

               
               5' of BC047016, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC047016, +
               

               
               5' of BC047016, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               173-756, gnl|bosTau2|chr7 (35473178-35472596)
               

               
               173-756, gnl|canFam2|chr2 (39451481-39452344)
               

               
               173-756, gnl|dasNov1|scaffold_2415 (43675-42784)
               

               
               173-756, gnl|echTel1|scaffold_318530 (36313-35440)
               

               
               173-756, gnl|hg17|chr5 (141000650-141001520)
               

               
               173-756, gnl|Hg17|chr5 (141001315-141000746)
               

               
               173-756, gnl|mm7|chr18 (38335203-38336046)
               

               
               173-756, gnl|Mm7|chr18 (38335856-38335298)
               

               
               173-756, gnl|monDom2|scaffold_6 (66966281-66965515)
               

               
               173-756, gnl|panTro1|chr4 (147636718-147637591)
               

               
               173-756, gnl|rheMac2|chr6 (138039057-138039911)
               

               
               173-756, gnl|rn3|chr18 (30906652-30907504)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               173-756, gnl|bosTau2|chr7 (35473178-35472596)
               

               
               173-756, gnl|canFam2|chr2 (39451481-39452344)
               

               
               173-756, gnl|dasNov1|scaffold_2415 (43675-42784)
               

               
               173-756, gnl|echTel1|scaffold_318530 (36313-35440)
               

               
               173-756, gnl|hg17|chr5 (141000650-141001520)
               

               
               173-756, gnl|Hg17|chr5 (141001315-141000746)
               

               
               173-756, gnl|mm7|chr18 (38335203-38336046)
               

               
               173-756, gnl|Mm7|chr18 (38335856-38335298)
               

               
               173-756, gnl|monDom2|scaffold_6 (66966281-66965515)
               

               
               173-756, gnl|panTro1|chr4 (147636718-147637591)
               

               
               173-756, gnl|rheMac2|chr6 (138039057-138039911)
               

               
               173-756, gnl|rn3|chr18 (30906652-30907504)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	186-422, - strand, RNAz p=0.998957
	333-644, + strand, RNAz p=0.995353
	430-529, - strand, RNAz p=0.984821

	186-241, DA568838 HEMBA1 Homo sapiens cDNA clone HEMBA1001655 5', mRNA (dbj\|DA568838.1\|), blast E-value=0.000000000004, identity=92.86%
	186-241, DA960144 SPLEN2 Homo sapiens cDNA clone SPLEN2040455 5', mRNA (dbj\|DA960144.1\|), blast E-value=0.000000000004, identity=92.86%
	187-253, 113139 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW669656.1\|), blast E-value=3e-16, identity=92.54%
	186-241, AGENCOURT_10437090 NIH_MGC_109 Homo sapiens cDNA clone (gb\|BU849451.1\|), blast E-value=0.000000000004, identity=92.86%
	186-241, 17000532631294 GRN_ES Homo sapiens cDNA 5', mRNA sequence (gb\|CN398068.1\|), blast E-value=0.000000000004, identity=92.86%
	186-253, 010128BEMN056747HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY175488.1\|), blast E-value=3e-19, identity=94.12%

	173-756, gnl\|bosTau2\|chr7 (35473178-35472596)
	173-756, gnl\|canFam2\|chr2 (39451481-39452344)
	173-756, gnl\|dasNov1\|scaffold_2415 (43675-42784)
	173-756, gnl\|echTel1\|scaffold_318530 (36313-35440)
	173-756, gnl\|hg17\|chr5 (141000650-141001520)
	173-756, gnl\|Hg17\|chr5 (141001315-141000746)
	173-756, gnl\|mm7\|chr18 (38335203-38336046)
	173-756, gnl\|Mm7\|chr18 (38335856-38335298)
	173-756, gnl\|monDom2\|scaffold_6 (66966281-66965515)
	173-756, gnl\|panTro1\|chr4 (147636718-147637591)
	173-756, gnl\|rheMac2\|chr6 (138039057-138039911)
	173-756, gnl\|rn3\|chr18 (30906652-30907504)