Non-Coding RNA Search

Ss1.1-rill315b_i11.5

Sequence:


               
               CAGACTGGGGTTCCCCCACCCCAGGCCTCCCTGCACCACCTCCAGCCACCAGGGGCCCCT
GCACTGCTGCCCCCACCGCACCAGGGCCTGGTGGCAGCCCCAGCTGGGGCCCCCGCTCCT
GCACCCGCCACCCGCTCAGTCTTGGCCGGCACAGCTTCCCCCAAGGGCTCCACTGCCAGG
TCAGATGCTGCTGAGCGGGGGTCCCCGGGGCCCGGTCCCCCAGCCGGGCCTGCAGCCCAG
CGTCATGGAGGACGACATCCTCATGGACCTCATCTGAATCCCCGACACCCAATAAAGTTC
CTTTTAATACAAAAAAAAAAAAAAGGGGGGGGCCGTTTAAAATTTTCCTTGGGGGGGCCA
AAGTTAACCCGTCCCCATTTTTTTTGAAAAAAGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGACTGGGGTTCCCCCACCCCAGGCCTCCCTGCACCACCTCCAGCCACCAGGGGCCCCT
GCACTGCTGCCCCCACCGCACCAGGGCCTGGTGGCAGCCCCAGCTGGGGCCCCCGCTCCT
GCACCCGCCACCCGCTCAGTCTTGGCCGGCACAGCTTCCCCCAAGGGCTCCACTGCCAGG
TCAGATGCTGCTGAGCGGGGGTCCCCGGGGCCCGGTCCCCCAGCCGGGCCTGCAGCCCAG
CGTCATGGAGGACGACATCCTCATGGACCTCATCTGAATCCCCGACACCCAATAAAGTTC
CTTTTAATACAAAAAAAAAAAAAAGGGGGGGGCCGTTTAAAATTTTCCTTGGGGGGGCCA
AAGTTAACCCGTCCCCATTTTTTTTGAAAAAAGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               176-311, - strand, RNAz p=0.985575

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-311, - strand, RNAz p=0.985575

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               176-311, gnl|bosTau2|chr18 (48875788-48875922)
               

               
               176-311, gnl|canFam2|chr1 (109614788-109614679)
               

               
               176-311, gnl|dasNov1|scaffold_204634 (688-589)
               

               
               176-311, gnl|echTel1|scaffold_316147 (35360-35451)
               

               
               176-311, gnl|hg17|chr19 (55031909-55032018)
               

               
               176-311, gnl|Hg17|chr19 (55031912-55032048)
               

               
               176-311, gnl|mm7|chr7 (41054045-41053936)
               

               
               176-311, gnl|Mm7|chr7 (41054040-41053908)
               

               
               176-311, gnl|monDom2|scaffold_105 (3959994-3959876)
               

               
               176-311, gnl|oryCun1|scaffold_137376 (2848-2957)
               

               
               176-311, gnl|panTro1|chr20 (52395037-52395146)
               

               
               176-311, gnl|rheMac2|chr19 (56115759-56115868)
               

               
               176-311, gnl|rn3|chr1 (95429778-95429669)
               

               
               176-311, gnl|tetNig1|chrUn_random (106901425-106901534)
               

               
               176-311, gnl|xenTro1|scaffold_98 (2251534-2251649)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-311, gnl|bosTau2|chr18 (48875788-48875922)
               

               
               176-311, gnl|canFam2|chr1 (109614788-109614679)
               

               
               176-311, gnl|dasNov1|scaffold_204634 (688-589)
               

               
               176-311, gnl|echTel1|scaffold_316147 (35360-35451)
               

               
               176-311, gnl|hg17|chr19 (55031909-55032018)
               

               
               176-311, gnl|Hg17|chr19 (55031912-55032048)
               

               
               176-311, gnl|mm7|chr7 (41054045-41053936)
               

               
               176-311, gnl|Mm7|chr7 (41054040-41053908)
               

               
               176-311, gnl|monDom2|scaffold_105 (3959994-3959876)
               

               
               176-311, gnl|oryCun1|scaffold_137376 (2848-2957)
               

               
               176-311, gnl|panTro1|chr20 (52395037-52395146)
               

               
               176-311, gnl|rheMac2|chr19 (56115759-56115868)
               

               
               176-311, gnl|rn3|chr1 (95429778-95429669)
               

               
               176-311, gnl|tetNig1|chrUn_random (106901425-106901534)
               

               
               176-311, gnl|xenTro1|scaffold_98 (2251534-2251649)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ill (0.351185)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)

	176-311, gnl\|bosTau2\|chr18 (48875788-48875922)
	176-311, gnl\|canFam2\|chr1 (109614788-109614679)
	176-311, gnl\|dasNov1\|scaffold_204634 (688-589)
	176-311, gnl\|echTel1\|scaffold_316147 (35360-35451)
	176-311, gnl\|hg17\|chr19 (55031909-55032018)
	176-311, gnl\|Hg17\|chr19 (55031912-55032048)
	176-311, gnl\|mm7\|chr7 (41054045-41053936)
	176-311, gnl\|Mm7\|chr7 (41054040-41053908)
	176-311, gnl\|monDom2\|scaffold_105 (3959994-3959876)
	176-311, gnl\|oryCun1\|scaffold_137376 (2848-2957)
	176-311, gnl\|panTro1\|chr20 (52395037-52395146)
	176-311, gnl\|rheMac2\|chr19 (56115759-56115868)
	176-311, gnl\|rn3\|chr1 (95429778-95429669)
	176-311, gnl\|tetNig1\|chrUn_random (106901425-106901534)
	176-311, gnl\|xenTro1\|scaffold_98 (2251534-2251649)