Non-Coding RNA Search

Ss1.1-rill315b_p13.5

Sequence:


               
               TTGTTAAATGATTGTGTTGTTGGGATTGCTTAATTATAATAGACATAAATAGAGCATCTC
AACTCTTTCATGCTGTTTGCTGAACAGTTTTTTTTTGTCACGCATCCTCAGCTGCTGATT
GTACCTGGTATGCGCTCTTCTAAGTTGGTAAAGGCACAGTGCATTCACACCAGACTTTCC
AAGAAAAATGCCAGCCTCTTTAGTGAGAAGGCTACCACACAACCCCCTGAACAATATCAA
GAGTGTTGATTGTGTGTAAAGCAGAAGACTTTCCCTTTAAGCCTTTTCCATTATTTTGTT
CCTTGCTGATTCTGCTGTGTTGTCTAAAAAGGTGAAGAGGACATCAATGTCTGATAGTGA
AATCGGCAGCAGGCAAGTGAAGCTGTTTGGGGTTACAGTTAAGACTTGGTATATTTGCTA
TTGGCCAGTATATGCTACACTATGAAGACCTAACTACTCATTGTTGCCTAGGCACAAGCC
TGTACAACATTTTGAGGTAAAAACATAGTCTATTTTCAAAAATACTGTTGTAGTTTGTGA
GTGTTGTTCATTAGTCACACATTAGCTGTAGAGTGAATGCATGACGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTAAATGATTGTGTTGTTGGGATTGCTTAATTATAATAGACATAAATAGAGCATCTC
AACTCTTTCATGCTGTTTGCTGAACAGTTTTTTTTTGTCACGCATCCTCAGCTGCTGATT
GTACCTGGTATGCGCTCTTCTAAGTTGGTAAAGGCACAGTGCATTCACACCAGACTTTCC
AAGAAAAATGCCAGCCTCTTTAGTGAGAAGGCTACCACACAACCCCCTGAACAATATCAA
GAGTGTTGATTGTGTGTAAAGCAGAAGACTTTCCCTTTAAGCCTTTTCCATTATTTTGTT
CCTTGCTGATTCTGCTGTGTTGTCTAAAAAGGTGAAGAGGACATCAATGTCTGATAGTGA
AATCGGCAGCAGGCAAGTGAAGCTGTTTGGGGTTACAGTTAAGACTTGGTATATTTGCTA
TTGGCCAGTATATGCTACACTATGAAGACCTAACTACTCATTGTTGCCTAGGCACAAGCC
TGTACAACATTTTGAGGTAAAAACATAGTCTATTTTCAAAAATACTGTTGTAGTTTGTGA
GTGTTGTTCATTAGTCACACATTAGCTGTAGAGTGAATGCATGACGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               433-540, - strand, RNAz p=0.95917

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               433-540, - strand, RNAz p=0.95917

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-588, gnl|bosTau2|chr28 (32742485-32741897)
               

               
               1-588, gnl|canFam2|chr28 (3406798-3408031)
               

               
               1-588, gnl|dasNov1|scaffold_27657 (12984-14121)
               

               
               1-588, gnl|echTel1|scaffold_311111 (11019-9774)
               

               
               1-588, gnl|hg17|chr10 (49314923-49316138)
               

               
               1-588, gnl|Hg17|chr10 (49315645-49316227)
               

               
               1-588, gnl|loxAfr1|scaffold_22315 (14885-16102)
               

               
               1-588, gnl|mm7|chr14 (30810102-30808934)
               

               
               1-588, gnl|Mm7|chr14 (30809369-30808830)
               

               
               1-588, gnl|monDom2|scaffold_14 (19302847-19304239)
               

               
               1-588, gnl|oryCun1|scaffold_68956 (3728-2583)
               

               
               1-588, gnl|panTro1|chr8 (49642178-49643396)
               

               
               1-588, gnl|rheMac2|chr9 (48180790-48179568)
               

               
               1-588, gnl|rn3|chr16 (8923277-8922067)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr28 (32742485-32741897)
               

               
               1-588, gnl|canFam2|chr28 (3406798-3408031)
               

               
               1-588, gnl|dasNov1|scaffold_27657 (12984-14121)
               

               
               1-588, gnl|echTel1|scaffold_311111 (11019-9774)
               

               
               1-588, gnl|hg17|chr10 (49314923-49316138)
               

               
               1-588, gnl|Hg17|chr10 (49315645-49316227)
               

               
               1-588, gnl|loxAfr1|scaffold_22315 (14885-16102)
               

               
               1-588, gnl|mm7|chr14 (30810102-30808934)
               

               
               1-588, gnl|Mm7|chr14 (30809369-30808830)
               

               
               1-588, gnl|monDom2|scaffold_14 (19302847-19304239)
               

               
               1-588, gnl|oryCun1|scaffold_68956 (3728-2583)
               

               
               1-588, gnl|panTro1|chr8 (49642178-49643396)
               

               
               1-588, gnl|rheMac2|chr9 (48180790-48179568)
               

               
               1-588, gnl|rn3|chr16 (8923277-8922067)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cty (0.10408)

	1-588, gnl\|bosTau2\|chr28 (32742485-32741897)
	1-588, gnl\|canFam2\|chr28 (3406798-3408031)
	1-588, gnl\|dasNov1\|scaffold_27657 (12984-14121)
	1-588, gnl\|echTel1\|scaffold_311111 (11019-9774)
	1-588, gnl\|hg17\|chr10 (49314923-49316138)
	1-588, gnl\|Hg17\|chr10 (49315645-49316227)
	1-588, gnl\|loxAfr1\|scaffold_22315 (14885-16102)
	1-588, gnl\|mm7\|chr14 (30810102-30808934)
	1-588, gnl\|Mm7\|chr14 (30809369-30808830)
	1-588, gnl\|monDom2\|scaffold_14 (19302847-19304239)
	1-588, gnl\|oryCun1\|scaffold_68956 (3728-2583)
	1-588, gnl\|panTro1\|chr8 (49642178-49643396)
	1-588, gnl\|rheMac2\|chr9 (48180790-48179568)
	1-588, gnl\|rn3\|chr16 (8923277-8922067)