Non-Coding RNA Search

Ss1.1-rill316b_a10.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAATGAGC
CAGTATTTAGTGCTTTCTAGGGAACATGCAGATGGAAGCTCAACTCTAAGAAAGGGCTGG
GGAGATGGGTTTATTTTTCCCACCTGTGAATATGTAAAACATAAAACCATTATCTCTGAG
GGACTTTTAACATCAGTGGCAGACAGATTTATATGCTCAACTAATGGAGTTGGAGCCATA
TAAGCATCTTGGGAAAGTTAGAGTCAGCTACTGGTGTAATGTACAGTTATATTTGTCTAT
AAATGGAGCTGTTTATGGCAATTTAATACCATTCTCTTTGTAAAGTGAATAAATATTCAT
CTTTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAATGAGC
CAGTATTTAGTGCTTTCTAGGGAACATGCAGATGGAAGCTCAACTCTAAGAAAGGGCTGG
GGAGATGGGTTTATTTTTCCCACCTGTGAATATGTAAAACATAAAACCATTATCTCTGAG
GGACTTTTAACATCAGTGGCAGACAGATTTATATGCTCAACTAATGGAGTTGGAGCCATA
TAAGCATCTTGGGAAAGTTAGAGTCAGCTACTGGTGTAATGTACAGTTATATTTGTCTAT
AAATGGAGCTGTTTATGGCAATTTAATACCATTCTCTTTGTAAAGTGAATAAATATTCAT
CTTTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               255-369, - strand, RNAz p=0.935326

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-369, - strand, RNAz p=0.935326

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               38-369, gnl|bosTau2|chr11 (50349928-50350260)
               

               
               38-369, gnl|canFam2|chr17 (25915279-25916654)
               

               
               38-369, gnl|dasNov1|scaffold_16513 (11807-10430)
               

               
               38-369, gnl|echTel1|scaffold_211312 (2175-769)
               

               
               38-369, gnl|hg17|chr2 (29081339-29082735)
               

               
               38-369, gnl|Hg17|chr2 (29082379-29082736)
               

               
               38-369, gnl|mm7|chr17 (69939076-69940403)
               

               
               38-369, gnl|Mm7|chr17 (69940100-69940404)
               

               
               38-369, gnl|monDom2|scaffold_1 (146684505-146683058)
               

               
               38-369, gnl|oryCun1|scaffold_97715 (9597-10917)
               

               
               38-369, gnl|panTro1|chr12 (30040873-30042261)
               

               
               38-369, gnl|rheMac2|chr13 (28945357-28946734)
               

               
               38-369, gnl|rn3|chr6 (23955210-23953880)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-369, gnl|bosTau2|chr11 (50349928-50350260)
               

               
               38-369, gnl|canFam2|chr17 (25915279-25916654)
               

               
               38-369, gnl|dasNov1|scaffold_16513 (11807-10430)
               

               
               38-369, gnl|echTel1|scaffold_211312 (2175-769)
               

               
               38-369, gnl|hg17|chr2 (29081339-29082735)
               

               
               38-369, gnl|Hg17|chr2 (29082379-29082736)
               

               
               38-369, gnl|mm7|chr17 (69939076-69940403)
               

               
               38-369, gnl|Mm7|chr17 (69940100-69940404)
               

               
               38-369, gnl|monDom2|scaffold_1 (146684505-146683058)
               

               
               38-369, gnl|oryCun1|scaffold_97715 (9597-10917)
               

               
               38-369, gnl|panTro1|chr12 (30040873-30042261)
               

               
               38-369, gnl|rheMac2|chr13 (28945357-28946734)
               

               
               38-369, gnl|rn3|chr6 (23955210-23953880)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               eje (0.0988338)

	38-369, gnl\|bosTau2\|chr11 (50349928-50350260)
	38-369, gnl\|canFam2\|chr17 (25915279-25916654)
	38-369, gnl\|dasNov1\|scaffold_16513 (11807-10430)
	38-369, gnl\|echTel1\|scaffold_211312 (2175-769)
	38-369, gnl\|hg17\|chr2 (29081339-29082735)
	38-369, gnl\|Hg17\|chr2 (29082379-29082736)
	38-369, gnl\|mm7\|chr17 (69939076-69940403)
	38-369, gnl\|Mm7\|chr17 (69940100-69940404)
	38-369, gnl\|monDom2\|scaffold_1 (146684505-146683058)
	38-369, gnl\|oryCun1\|scaffold_97715 (9597-10917)
	38-369, gnl\|panTro1\|chr12 (30040873-30042261)
	38-369, gnl\|rheMac2\|chr13 (28945357-28946734)
	38-369, gnl\|rn3\|chr6 (23955210-23953880)