Non-Coding RNA Search

Ss1.1-rill316b_i19.5

Sequence:


               
               TGGAGCTGTAGCTGCTGGTTTACACCACAGCCAAAGAAATGCCAGATCCGAGCTGCGTCT
GTGACCTACACCAGAGCTCATGGCAACACCAAATCATTAACCTCCTGAGCAAGGCCAGGG
ATCAAACCTGCATTCTCATGGATACTAGTTGGATTCATTTCCACTGAGCCATGATGGGGA
CTCTGTAGTCAGCTCTTAACAGAGACAATCTGCTGGGATTTTGGAAAGGAATCTGAATGC
TACCCTTCAGAGATTACTTAAATAACTGTAATAACGATTAAAAAAGGCACAATTTGGGTA
TTGGGTTTTTTCCCTTCTTCTGAGACATTCTGCTATTTTACTTTTTGTAGCTGCTTGTTT
ATGTGAAAGGGGTTATGTTTACTTAGTTACCTGTGTCAGCCAATCTGACTGCCTTAGGGA
AAGAAGCCCCTCAAACCCTCCAAGTCCCTCTGGCCAGGAGCCCCTCAAGCCTTTTACGTC
AGGGGCTCCACTCAGAAAATAGGAAGCAGCTGTTCTCTACATTCCTGGCCAGAAATGGAT
CTCACTCAGTTTCTAGGCATCAGACCAATCATCAGCACCACCATGATCCATGTCCCTGCC
TGTGCATTTCCATCCGTCTAACCCACTCACCTTCTCAGGAAACCTTGGCCTCTGCTAAGC
TGTGTTTGGTTCTTGAGAAGTGGGGGCACCCTGAAGGAAACTACCACTCATGCTGTTGGT
GCTGTTTGCAACCTAGAAAGCTGCACTGGTGCTGATGCTCCTTAGGACCCAAGGGGAGGG
ATGTAACTCAGCCCTAGACTTCTTGAATAACCTCTGCAATCTGTTTTCTGCCCTGGCGCC
TATGAGACCCAGTATGTCAGCAGAAAAGGAAGGGAGGGAGAAAAAGAGGCATGTCCTCCT
GCCGCCCAACCTTCTGCACAGATGGAAGCGCCTCAGGGCTGTTGAGAGAAAGGTTTTATT
CCATATCCATGACCTGACCTCATGCTGTGTGGAACTGACCCCCTCAAAGAGGGCTGGATG
GCAGGTCTCTGTACTCAGGTACCTCTTTCAGGGTTTTCTAACCCTGACACAGACTGTAAG
CACCTTCTCTCATCCACGCTGTTCTGTGTAATTTAGCTTTGCCTGGCTAAGTCTGCTTCT
GAATTATTTGTAAAATTTGCTCTATATTTATAATAAAAATTATATATCAGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGCTGTAGCTGCTGGTTTACACCACAGCCAAAGAAATGCCAGATCCGAGCTGCGTCT
GTGACCTACACCAGAGCTCATGGCAACACCAAATCATTAACCTCCTGAGCAAGGCCAGGG
ATCAAACCTGCATTCTCATGGATACTAGTTGGATTCATTTCCACTGAGCCATGATGGGGA
CTCTGTAGTCAGCTCTTAACAGAGACAATCTGCTGGGATTTTGGAAAGGAATCTGAATGC
TACCCTTCAGAGATTACTTAAATAACTGTAATAACGATTAAAAAAGGCACAATTTGGGTA
TTGGGTTTTTTCCCTTCTTCTGAGACATTCTGCTATTTTACTTTTTGTAGCTGCTTGTTT
ATGTGAAAGGGGTTATGTTTACTTAGTTACCTGTGTCAGCCAATCTGACTGCCTTAGGGA
AAGAAGCCCCTCAAACCCTCCAAGTCCCTCTGGCCAGGAGCCCCTCAAGCCTTTTACGTC
AGGGGCTCCACTCAGAAAATAGGAAGCAGCTGTTCTCTACATTCCTGGCCAGAAATGGAT
CTCACTCAGTTTCTAGGCATCAGACCAATCATCAGCACCACCATGATCCATGTCCCTGCC
TGTGCATTTCCATCCGTCTAACCCACTCACCTTCTCAGGAAACCTTGGCCTCTGCTAAGC
TGTGTTTGGTTCTTGAGAAGTGGGGGCACCCTGAAGGAAACTACCACTCATGCTGTTGGT
GCTGTTTGCAACCTAGAAAGCTGCACTGGTGCTGATGCTCCTTAGGACCCAAGGGGAGGG
ATGTAACTCAGCCCTAGACTTCTTGAATAACCTCTGCAATCTGTTTTCTGCCCTGGCGCC
TATGAGACCCAGTATGTCAGCAGAAAAGGAAGGGAGGGAGAAAAAGAGGCATGTCCTCCT
GCCGCCCAACCTTCTGCACAGATGGAAGCGCCTCAGGGCTGTTGAGAGAAAGGTTTTATT
CCATATCCATGACCTGACCTCATGCTGTGTGGAACTGACCCCCTCAAAGAGGGCTGGATG
GCAGGTCTCTGTACTCAGGTACCTCTTTCAGGGTTTTCTAACCCTGACACAGACTGTAAG
CACCTTCTCTCATCCACGCTGTTCTGTGTAATTTAGCTTTGCCTGGCTAAGTCTGCTTCT
GAATTATTTGTAAAATTTGCTCTATATTTATAATAAAAATTATATATCAGAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               381-573, - strand, RNAz p=0.999918

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-573, - strand, RNAz p=0.999918

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               186-573, gnl|bosTau2|chr18 (46644173-46644548)
               

               
               186-573, gnl|Hg17|chr19 (47704311-47703929)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-573, gnl|bosTau2|chr18 (46644173-46644548)
               

               
               186-573, gnl|Hg17|chr19 (47704311-47703929)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ill (0.351185)
               

               
               mgp (0.230681)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               mgp (0.230681)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               eje (0.0988338)

	186-573, gnl\|bosTau2\|chr18 (46644173-46644548)
	186-573, gnl\|Hg17\|chr19 (47704311-47703929)

	ill (0.351185)
	mgp (0.230681)
	jej (0.197844)
	col (0.195008)
	cmu (0.186393)
	sin (0.174948)
	mcp (0.170648)
	eje (0.0988338)