Ss1.1-rill316b_m3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTTGTACCACGTGTCTGACTCCGAGGGAAAGGTGGTGGTCAGAGAAGTGGCCACACGG CCACTCACACAGGACCTACTCAGTCACGAGGACTGTTACATCCTGGACCAGGGGGGCCTG AAGATCTACGTGTGGAAGGGGAAGAATGCTAATCCCCAGGAGAAGAAGGAGGCCATGAAC CAGGCACTGAACTTTATCAAAGCGAAGCAGTACCCACCGAGCACGCAGGTGGAAGTGCAG AATGACGGGGCCGAGTCAGCCGTCTTTCAGCAGCTCTTCCAGAAGTGGACGGTGCCCAAC CAGACCTCAGGCCTGGGCAAAACCCACACTGTGGGCTCCGTGGCCAAGGTGGAGCAGGTG AAGTTCGATGCCACGTCCATGCATGTCCAGCCTCAGGTGGCTGCCCAGCAGAAGATGGTT GACGACGGGAGTGGGGAGGTGGAGATCTGGCGCATTGAGAACCTAGATCTGGTGCCTGTG GAGTCCAAGTGGGTGGGCCACTTCTATGGGGGCGACTGCTACCTGCTGCTCTACACCTAC CTCATCGGCGAGAAGCAGCACTATCTGCTCTACATCTGGCAGGGCAGTCAAGCCAGCCAG GATGAAATCACAGCCTCGGCCTATCAGGCGGTCATCCTGGACCAGAAATACAACAATGAA CCAGTCCAGATCCGGGTCCCGATGGGCAAGGAGCCACCTCACCTCATGTCCATCTTCAAG GGACGCATGGTGGTCTACCAGGGAGGCACTTCCCGGGCTAACAGCACGGAGCCTGTGCCC TCCACACGGCTGTTCCAGGTCCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTTGTACCACGTGTCTGACTCCGAGGGAAAGGTGGTGGTCAGAGAAGTGGCCACACGG CCACTCACACAGGACCTACTCAGTCACGAGGACTGTTACATCCTGGACCAGGGGGGCCTG AAGATCTACGTGTGGAAGGGGAAGAATGCTAATCCCCAGGAGAAGAAGGAGGCCATGAAC CAGGCACTGAACTTTATCAAAGCGAAGCAGTACCCACCGAGCACGCAGGTGGAAGTGCAG AATGACGGGGCCGAGTCAGCCGTCTTTCAGCAGCTCTTCCAGAAGTGGACGGTGCCCAAC CAGACCTCAGGCCTGGGCAAAACCCACACTGTGGGCTCCGTGGCCAAGGTGGAGCAGGTG AAGTTCGATGCCACGTCCATGCATGTCCAGCCTCAGGTGGCTGCCCAGCAGAAGATGGTT GACGACGGGAGTGGGGAGGTGGAGATCTGGCGCATTGAGAACCTAGATCTGGTGCCTGTG GAGTCCAAGTGGGTGGGCCACTTCTATGGGGGCGACTGCTACCTGCTGCTCTACACCTAC CTCATCGGCGAGAAGCAGCACTATCTGCTCTACATCTGGCAGGGCAGTCAAGCCAGCCAG GATGAAATCACAGCCTCGGCCTATCAGGCGGTCATCCTGGACCAGAAATACAACAATGAA CCAGTCCAGATCCGGGTCCCGATGGGCAAGGAGCCACCTCACCTCATGTCCATCTTCAAG GGACGCATGGTGGTCTACCAGGGAGGCACTTCCCGGGCTAACAGCACGGAGCCTGTGCCC TCCACACGGCTGTTCCAGGTCCGG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 225-343, - strand, RNAz p=0.505901 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 225-343, - strand, RNAz p=0.505901 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 189-343, gnl|bosTau2|chr2 (59652957-59652803) | |
| 189-343, gnl|canFam2|chr37 (28076547-28076667) | |
| 189-343, gnl|danRer3|chrNA (91077113-91077009) | |
| 189-343, gnl|dasNov1|scaffold_913 (118065-118187) | |
| 189-343, gnl|echTel1|scaffold_321104 (176896-176998) | |
| 189-343, gnl|fr1|chrUn (122607508-122607390) | |
| 189-343, gnl|galGal2|chr7 (23278536-23278417) | |
| 189-343, gnl|hg17|chr2 (219120935-219121053) | |
| 189-343, gnl|Hg17|chr2 (219120952-219121106) | |
| 189-343, gnl|loxAfr1|scaffold_11717 (20174-20278) | |
| 189-343, gnl|mm7|chr1 (74662581-74662700) | |
| 189-343, gnl|Mm7|chr1 (74662599-74662753) | |
| 189-343, gnl|monDom2|scaffold_39 (2153301-2153170) | |
| 189-343, gnl|panTro1|chr13 (109280637-109280755) | |
| 189-343, gnl|rheMac2|chr12 (82267157-82267272) | |
| 189-343, gnl|rn3|chr9 (73908672-73908791) | |
| 189-343, gnl|tetNig1|chr6 (3138365-3138483) | |
| 189-343, gnl|xenTro1|scaffold_31 (1618140-1618258) | |
| 580-748, gnl|bosTau2|chr2 (59651327-59651158) | |
| 580-748, gnl|canFam2|chr37 (28078359-28078552) | |
| 580-748, gnl|danRer3|chrNA (91076003-91075815) | |
| 580-748, gnl|dasNov1|scaffold_36093 (17907-18103) | |
| 580-748, gnl|echTel1|scaffold_321104 (177965-178157) | |
| 580-748, gnl|fr1|chrUn (122606777-122606610) | |
| 580-748, gnl|galGal2|chr7 (23277774-23277607) | |
| 580-748, gnl|hg17|chr2 (219122993-219123186) | |
| 580-748, gnl|Hg17|chr2 (219123018-219123187) | |
| 580-748, gnl|loxAfr1|scaffold_24999 (50772-50581) | |
| 580-748, gnl|mm7|chr1 (74665182-74665375) | |
| 580-748, gnl|Mm7|chr1 (74665207-74665382) | |
| 580-748, gnl|monDom2|scaffold_39 (2151568-2151365) | |
| 580-748, gnl|panTro1|chr13 (109282691-109282884) | |
| 580-748, gnl|rheMac2|chr12 (82269222-82269415) | |
| 580-748, gnl|rn3|chr9 (73910909-73911101) | |
| 580-748, gnl|tetNig1|chr6 (3139139-3139305) | |
| 580-748, gnl|xenTro1|scaffold_31 (1620045-1620238) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 189-343, gnl|bosTau2|chr2 (59652957-59652803) | |
| 189-343, gnl|canFam2|chr37 (28076547-28076667) | |
| 189-343, gnl|danRer3|chrNA (91077113-91077009) | |
| 189-343, gnl|dasNov1|scaffold_913 (118065-118187) | |
| 189-343, gnl|echTel1|scaffold_321104 (176896-176998) | |
| 189-343, gnl|fr1|chrUn (122607508-122607390) | |
| 189-343, gnl|galGal2|chr7 (23278536-23278417) | |
| 189-343, gnl|hg17|chr2 (219120935-219121053) | |
| 189-343, gnl|Hg17|chr2 (219120952-219121106) | |
| 189-343, gnl|loxAfr1|scaffold_11717 (20174-20278) | |
| 189-343, gnl|mm7|chr1 (74662581-74662700) | |
| 189-343, gnl|Mm7|chr1 (74662599-74662753) | |
| 189-343, gnl|monDom2|scaffold_39 (2153301-2153170) | |
| 189-343, gnl|panTro1|chr13 (109280637-109280755) | |
| 189-343, gnl|rheMac2|chr12 (82267157-82267272) | |
| 189-343, gnl|rn3|chr9 (73908672-73908791) | |
| 189-343, gnl|tetNig1|chr6 (3138365-3138483) | |
| 189-343, gnl|xenTro1|scaffold_31 (1618140-1618258) | |
| 580-748, gnl|bosTau2|chr2 (59651327-59651158) | |
| 580-748, gnl|canFam2|chr37 (28078359-28078552) | |
| 580-748, gnl|danRer3|chrNA (91076003-91075815) | |
| 580-748, gnl|dasNov1|scaffold_36093 (17907-18103) | |
| 580-748, gnl|echTel1|scaffold_321104 (177965-178157) | |
| 580-748, gnl|fr1|chrUn (122606777-122606610) | |
| 580-748, gnl|galGal2|chr7 (23277774-23277607) | |
| 580-748, gnl|hg17|chr2 (219122993-219123186) | |
| 580-748, gnl|Hg17|chr2 (219123018-219123187) | |
| 580-748, gnl|loxAfr1|scaffold_24999 (50772-50581) | |
| 580-748, gnl|mm7|chr1 (74665182-74665375) | |
| 580-748, gnl|Mm7|chr1 (74665207-74665382) | |
| 580-748, gnl|monDom2|scaffold_39 (2151568-2151365) | |
| 580-748, gnl|panTro1|chr13 (109282691-109282884) | |
| 580-748, gnl|rheMac2|chr12 (82269222-82269415) | |
| 580-748, gnl|rn3|chr9 (73910909-73911101) | |
| 580-748, gnl|tetNig1|chr6 (3139139-3139305) | |
| 580-748, gnl|xenTro1|scaffold_31 (1620045-1620238) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| nje (0.16592) |