Non-Coding RNA Search

Ss1.1-rill319b_j1.5.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTTCTCATTTTTATTTGA
CAGAAAAAGTTGCTCTTGCTGTACAGATTTTAAAAAACCAAAAATGCCTTTAAGAAACGT
GAAAAGTTGGGGGGAGGGCGTCACCACCTCACTGGGGAGCCAGGAGGAGCCAACTCATTT
CAACTCCTGCTGCCCCTTCCTTCCAGAAACACCTCGCACAGGTTCCCAGGTCCCAACCAT
CATCCCCCCCCAGGAACTTGGGGGTTAAAGGGGGGGCAGTGCCTCCCAGGTCCTTTCTGA
CTCAAGACCTGGGAGCCCCAAACTGTCTGCTCCCCTCCCACAACTCCCATTCTCATTCCC
ACCCACCCCAACCCCCTAAAACATGTGAACCAGGAAAAACTCACAGAGATTTAACATTTC
ACAGGAACAAACAAAAAGGAAGAGGGAGAGAAAGAAGGGAGTCCTCCCCCCAAGGATGCT
GCCAGGGTAAAAGGGGGGGGGGAGTGAGGAAGAGAAGGGCCCTCCCACAGCTCTGTCCGG
GAGAAAGGGGGGCACTCCCTGCGGCTCCAGAATTTGGGGTGTGGTGGGGGTGTTCCCCAC
CACAAGATTCATGGAGACCTGGAGGAGCGGTGCCTCGCGGAGCGGGGGCTGGGTGTCTCC
TTCCTGCGCTTGTGGCCTGGGGAGCGGCTGTCCCCACGCTGGCCTTTCCGGGAACCCCGT
TCGCTGCTGCTCTGCTGGTCCCACGGCGCCGTCTGGGGTGAGGGGCGGCGGCGCTCTGCA
GGTGAGTAGCTGAGGGACCTAGAGTCCCGCAGGGAGTCTATTGGCTTCCGGGGGCTGCGA
CTCCTCTCGCCACACACACCATCCGAGTGCCCAACAGCAGGTTTGGGCAACGCCTGGGGG
CCAGGCTTAGCAGGGGAGGGGGAGGAAGAAGTAGAGGAGGAAGAGGACGATGAAGAGGAG
GAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAAGACGAGGAGGAGGAGGAAGACGAGGAG
GAGCTGGAACTAGAGCTGCTAGACCGCCTCTTCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATTTCTCATTTTTATTTGA
CAGAAAAAGTTGCTCTTGCTGTACAGATTTTAAAAAACCAAAAATGCCTTTAAGAAACGT
GAAAAGTTGGGGGGAGGGCGTCACCACCTCACTGGGGAGCCAGGAGGAGCCAACTCATTT
CAACTCCTGCTGCCCCTTCCTTCCAGAAACACCTCGCACAGGTTCCCAGGTCCCAACCAT
CATCCCCCCCCAGGAACTTGGGGGTTAAAGGGGGGGCAGTGCCTCCCAGGTCCTTTCTGA
CTCAAGACCTGGGAGCCCCAAACTGTCTGCTCCCCTCCCACAACTCCCATTCTCATTCCC
ACCCACCCCAACCCCCTAAAACATGTGAACCAGGAAAAACTCACAGAGATTTAACATTTC
ACAGGAACAAACAAAAAGGAAGAGGGAGAGAAAGAAGGGAGTCCTCCCCCCAAGGATGCT
GCCAGGGTAAAAGGGGGGGGGGAGTGAGGAAGAGAAGGGCCCTCCCACAGCTCTGTCCGG
GAGAAAGGGGGGCACTCCCTGCGGCTCCAGAATTTGGGGTGTGGTGGGGGTGTTCCCCAC
CACAAGATTCATGGAGACCTGGAGGAGCGGTGCCTCGCGGAGCGGGGGCTGGGTGTCTCC
TTCCTGCGCTTGTGGCCTGGGGAGCGGCTGTCCCCACGCTGGCCTTTCCGGGAACCCCGT
TCGCTGCTGCTCTGCTGGTCCCACGGCGCCGTCTGGGGTGAGGGGCGGCGGCGCTCTGCA
GGTGAGTAGCTGAGGGACCTAGAGTCCCGCAGGGAGTCTATTGGCTTCCGGGGGCTGCGA
CTCCTCTCGCCACACACACCATCCGAGTGCCCAACAGCAGGTTTGGGCAACGCCTGGGGG
CCAGGCTTAGCAGGGGAGGGGGAGGAAGAAGTAGAGGAGGAAGAGGACGATGAAGAGGAG
GAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAAGACGAGGAGGAGGAGGAAGACGAGGAG
GAGCTGGAACTAGAGCTGCTAGACCGCCTCTTCCGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               270-387, + strand, RNAz p=0.987001
               

               
               499-630, - strand, RNAz p=0.971038

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-387, + strand, RNAz p=0.987001
               

               
               499-630, - strand, RNAz p=0.971038

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BC041155, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC041155, -

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               39-630, gnl|bosTau2|chr25 (26464-25891)
               

               
               39-630, gnl|Hg17|chr16 (2761410-2760848)
               

               
               39-630, gnl|Mm7|chr17 (22004612-22004079)
               


               
               877-1056, gnl|bosTau2|chr25 (24355-24176)
               

               
               877-1056, gnl|Hg17|chr16 (2759253-2759071)
               

               
               877-1056, gnl|Mm7|chr17 (22002542-22002360)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-630, gnl|bosTau2|chr25 (26464-25891)
               

               
               39-630, gnl|Hg17|chr16 (2761410-2760848)
               

               
               39-630, gnl|Mm7|chr17 (22004612-22004079)
               


               
               877-1056, gnl|bosTau2|chr25 (24355-24176)
               

               
               877-1056, gnl|Hg17|chr16 (2759253-2759071)
               

               
               877-1056, gnl|Mm7|chr17 (22002542-22002360)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               ill (0.877963)
               

               
               ece (0.45861)
               

               
               lnt (0.426925)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.877963)
               

               
               ece (0.45861)
               

               
               lnt (0.426925)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	270-387, + strand, RNAz p=0.987001
	499-630, - strand, RNAz p=0.971038

	39-630, gnl\|bosTau2\|chr25 (26464-25891)
	39-630, gnl\|Hg17\|chr16 (2761410-2760848)
	39-630, gnl\|Mm7\|chr17 (22004612-22004079)

	877-1056, gnl\|bosTau2\|chr25 (24355-24176)
	877-1056, gnl\|Hg17\|chr16 (2759253-2759071)
	877-1056, gnl\|Mm7\|chr17 (22002542-22002360)

	ill (0.877963)
	ece (0.45861)
	lnt (0.426925)
	eye (0.341006)
	fhi (0.339155)
	nje (0.33184)
	cag (0.302389)
	fce (0.271592)
	cly (0.241284)
	eru (0.240096)
	ecc (0.23007)
	nms (0.213858)
	pty (0.142714)
	hlv (0.139256)
	nca (0.136874)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	med (0.116252)
	jca (0.11396)
	nbm (0.0993246)
	eje (0.0988338)