Ss1.1-rill320b_h19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATTTTGGTGTGGAGCTGCACAGAGAGGAGATGTACATCTTCATGGAGTACTGCGACGAG GGGACCCTGGAGGAGGTGTCCCGGCTGGGGCTTCAGGAGCACGTCATCAGGCTGTACTCC AAGCAGATCACCGTTGCCATCAACGTCCTGCACGAGCACGGCATCGTCCACCGCGACATC AAAGGCGCCAACATCTTCCTTACGTCGTCTGGGCTCATCAAACTGGGAGATTTTGGATGC TCAGTAAAGCTTAAAAACAACGCGCAGACCATGCCTGGGGAAGTGAATAGCACACTGGGG ACGGCAGCTTACATGGCTCCGGAAGTCATCACTCGCGCGAAAGGAGAGGGCCATGGGCGA GCGGCCGACATCTGGAGTCTGGGCTGTGTTGTCATTGAGATGGTGACCGGCAAGAGACCT TGGCATGAATATGAACACAACTTCCAGATAATGTACAAGGTGGGGATGGGGCATAAGCCA CCGATCCCTGAAAGACTGAGCCCGGAAGGAAAGGACTTCCTTGCTCACTGCCTAGAAAGT GAGCCCAGGATGAGGTGGACGGCCAGCCAGCTCCTGGACCATTCCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATTTTGGTGTGGAGCTGCACAGAGAGGAGATGTACATCTTCATGGAGTACTGCGACGAG GGGACCCTGGAGGAGGTGTCCCGGCTGGGGCTTCAGGAGCACGTCATCAGGCTGTACTCC AAGCAGATCACCGTTGCCATCAACGTCCTGCACGAGCACGGCATCGTCCACCGCGACATC AAAGGCGCCAACATCTTCCTTACGTCGTCTGGGCTCATCAAACTGGGAGATTTTGGATGC TCAGTAAAGCTTAAAAACAACGCGCAGACCATGCCTGGGGAAGTGAATAGCACACTGGGG ACGGCAGCTTACATGGCTCCGGAAGTCATCACTCGCGCGAAAGGAGAGGGCCATGGGCGA GCGGCCGACATCTGGAGTCTGGGCTGTGTTGTCATTGAGATGGTGACCGGCAAGAGACCT TGGCATGAATATGAACACAACTTCCAGATAATGTACAAGGTGGGGATGGGGCATAAGCCA CCGATCCCTGAAAGACTGAGCCCGGAAGGAAAGGACTTCCTTGCTCACTGCCTAGAAAGT GAGCCCAGGATGAGGTGGACGGCCAGCCAGCTCCTGGACCATTCCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 413-571, - strand, RNAz p=0.723005 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 413-571, - strand, RNAz p=0.723005 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 25-185, gnl|bosTau2|chr9 (58895783-58895943) | |
| 25-185, gnl|canFam2|chr1 (52739179-52739381) | |
| 25-185, gnl|danRer3|chr13 (38445426-38445222) | |
| 25-185, gnl|dasNov1|scaffold_4849 (43183-43383) | |
| 25-185, gnl|fr1|chrUn (160715315-160715129) | |
| 25-185, gnl|galGal2|chr3 (41374676-41374490) | |
| 25-185, gnl|hg17|chr6 (161501177-161501385) | |
| 25-185, gnl|Hg17|chr6 (161501198-161501358) | |
| 25-185, gnl|loxAfr1|scaffold_59384 (231-424) | |
| 25-185, gnl|mm7|chr17 (10952696-10952494) | |
| 25-185, gnl|Mm7|chr17 (10952672-10952512) | |
| 25-185, gnl|monDom2|scaffold_0 (42473333-42473139) | |
| 25-185, gnl|oryCun1|scaffold_213062 (109076-108891) | |
| 25-185, gnl|panTro1|chr5 (165377698-165377906) | |
| 25-185, gnl|rheMac2|chr4 (157923079-157923287) | |
| 25-185, gnl|rn3|chr1 (42973362-42973563) | |
| 25-185, gnl|tetNig1|chr17 (3798894-3798721) | |
| 413-588, gnl|bosTau2|chr9 (58900085-58900260) | |
| 413-588, gnl|canFam2|chr1 (52743714-52743917) | |
| 413-588, gnl|danRer3|chr13 (38437934-38437727) | |
| 413-588, gnl|echTel1|scaffold_296952 (148242-148041) | |
| 413-588, gnl|fr1|chrUn (160714612-160714418) | |
| 413-588, gnl|galGal2|chr3 (41367352-41367158) | |
| 413-588, gnl|hg17|chr6 (161506559-161506762) | |
| 413-588, gnl|Hg17|chr6 (161506564-161506739) | |
| 413-588, gnl|loxAfr1|scaffold_59384 (6279-6481) | |
| 413-588, gnl|mm7|chr17 (10947167-10946964) | |
| 413-588, gnl|Mm7|chr17 (10947160-10946985) | |
| 413-588, gnl|monDom2|scaffold_0 (42459458-42459260) | |
| 413-588, gnl|oryCun1|scaffold_213062 (103561-103357) | |
| 413-588, gnl|panTro1|chr5 (165383078-165383285) | |
| 413-588, gnl|rheMac2|chr4 (157928676-157928879) | |
| 413-588, gnl|rn3|chr1 (42979880-42980083) | |
| 413-588, gnl|tetNig1|chr17 (3798219-3798023) | |
| 413-588, gnl|xenTro1|scaffold_188 (372199-372402) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-185, gnl|bosTau2|chr9 (58895783-58895943) | |
| 25-185, gnl|canFam2|chr1 (52739179-52739381) | |
| 25-185, gnl|danRer3|chr13 (38445426-38445222) | |
| 25-185, gnl|dasNov1|scaffold_4849 (43183-43383) | |
| 25-185, gnl|fr1|chrUn (160715315-160715129) | |
| 25-185, gnl|galGal2|chr3 (41374676-41374490) | |
| 25-185, gnl|hg17|chr6 (161501177-161501385) | |
| 25-185, gnl|Hg17|chr6 (161501198-161501358) | |
| 25-185, gnl|loxAfr1|scaffold_59384 (231-424) | |
| 25-185, gnl|mm7|chr17 (10952696-10952494) | |
| 25-185, gnl|Mm7|chr17 (10952672-10952512) | |
| 25-185, gnl|monDom2|scaffold_0 (42473333-42473139) | |
| 25-185, gnl|oryCun1|scaffold_213062 (109076-108891) | |
| 25-185, gnl|panTro1|chr5 (165377698-165377906) | |
| 25-185, gnl|rheMac2|chr4 (157923079-157923287) | |
| 25-185, gnl|rn3|chr1 (42973362-42973563) | |
| 25-185, gnl|tetNig1|chr17 (3798894-3798721) | |
| 413-588, gnl|bosTau2|chr9 (58900085-58900260) | |
| 413-588, gnl|canFam2|chr1 (52743714-52743917) | |
| 413-588, gnl|danRer3|chr13 (38437934-38437727) | |
| 413-588, gnl|echTel1|scaffold_296952 (148242-148041) | |
| 413-588, gnl|fr1|chrUn (160714612-160714418) | |
| 413-588, gnl|galGal2|chr3 (41367352-41367158) | |
| 413-588, gnl|hg17|chr6 (161506559-161506762) | |
| 413-588, gnl|Hg17|chr6 (161506564-161506739) | |
| 413-588, gnl|loxAfr1|scaffold_59384 (6279-6481) | |
| 413-588, gnl|mm7|chr17 (10947167-10946964) | |
| 413-588, gnl|Mm7|chr17 (10947160-10946985) | |
| 413-588, gnl|monDom2|scaffold_0 (42459458-42459260) | |
| 413-588, gnl|oryCun1|scaffold_213062 (103561-103357) | |
| 413-588, gnl|panTro1|chr5 (165383078-165383285) | |
| 413-588, gnl|rheMac2|chr4 (157928676-157928879) | |
| 413-588, gnl|rn3|chr1 (42979880-42980083) | |
| 413-588, gnl|tetNig1|chr17 (3798219-3798023) | |
| 413-588, gnl|xenTro1|scaffold_188 (372199-372402) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| bla (0.124347) | |
| clu (0.119646) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| bla (0.124347) | |
| clu (0.119646) |