Non-Coding RNA Search

Ss1.1-rill322b_b15.5

Sequence:


               
               TAGAGAATGAGGGCAAGGTCTAGATGCTTGGGTGTTGGGTGCAGCCAAATGCACGATGGT
TGTGTTGGCAGAGGGAGGCCCAGGTGAAGTTCCACGTTCTCCTGACATCATATGAGCTGA
TCACCATTGATCAGGCAGCGCTTGGCTCCATCCGCTGGGCCTGTCTCGTGGTGGATGAGG
CCCATCGGCTCAAGAACAACCAGTCCAAGGTGAGTGAAATACTCAGACCTCAGAAACTTG
AGACTGTGGACTCCTACTTGTCCTCATCCTAAAAAATAAAGTTATGGGGACTCTCTGCGG
TCTGGGAGACAGGATGCTTGGGTTAAGCCTGGGGAAGAAGTCCCCAGATTGGAAGAGGGG
GAAGGCTAGGGATTTGAGGGCCTCTGATTCTGAAAGAAATAGGAGCTGAAGTCAGGAAAA
GGTGGGCCAGCCACTTGCCACTGATGGGCCCTTTCTCCTGCCTTTCCTTGCCCCCTTTAC
TAGTTTATCAGGGTCCTCAATGGCTACAAGATAGATCATAAGTTGCTGCTGACAGGGACG
CCATTGCAGAATAATCTGGAGGAGCTCTTCCATCTCCTGAACTTCCTCACCCCAGAGAGG
TTTAAGTAAGTGGCTCAGTAGGGTGGTCTGCAGAGGAGAGGGGGCAGCTGAGTGCTAGAG
GATGGATCTGAAGGGGAGGATAGAGCCTGAGGCCGGACACGGAGCCCGACTCCCGGCTCG
GTTCCTTTATCTTCTTCTGGCTATTAGCAACCTGGAGGGCTTCCTGGAGGAGTTTGCTGA
CATATCCAAAGAAGACCAGATTAAGAAACTTCATGACTTGCTGGGGCCACATATGCTGCG
GAGGCTTAAGGCCGATGTCTTTAAGAACATGCCAGCCAAGACAGAGCTCATCGTTCGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAGAATGAGGGCAAGGTCTAGATGCTTGGGTGTTGGGTGCAGCCAAATGCACGATGGT
TGTGTTGGCAGAGGGAGGCCCAGGTGAAGTTCCACGTTCTCCTGACATCATATGAGCTGA
TCACCATTGATCAGGCAGCGCTTGGCTCCATCCGCTGGGCCTGTCTCGTGGTGGATGAGG
CCCATCGGCTCAAGAACAACCAGTCCAAGGTGAGTGAAATACTCAGACCTCAGAAACTTG
AGACTGTGGACTCCTACTTGTCCTCATCCTAAAAAATAAAGTTATGGGGACTCTCTGCGG
TCTGGGAGACAGGATGCTTGGGTTAAGCCTGGGGAAGAAGTCCCCAGATTGGAAGAGGGG
GAAGGCTAGGGATTTGAGGGCCTCTGATTCTGAAAGAAATAGGAGCTGAAGTCAGGAAAA
GGTGGGCCAGCCACTTGCCACTGATGGGCCCTTTCTCCTGCCTTTCCTTGCCCCCTTTAC
TAGTTTATCAGGGTCCTCAATGGCTACAAGATAGATCATAAGTTGCTGCTGACAGGGACG
CCATTGCAGAATAATCTGGAGGAGCTCTTCCATCTCCTGAACTTCCTCACCCCAGAGAGG
TTTAAGTAAGTGGCTCAGTAGGGTGGTCTGCAGAGGAGAGGGGGCAGCTGAGTGCTAGAG
GATGGATCTGAAGGGGAGGATAGAGCCTGAGGCCGGACACGGAGCCCGACTCCCGGCTCG
GTTCCTTTATCTTCTTCTGGCTATTAGCAACCTGGAGGGCTTCCTGGAGGAGTTTGCTGA
CATATCCAAAGAAGACCAGATTAAGAAACTTCATGACTTGCTGGGGCCACATATGCTGCG
GAGGCTTAAGGCCGATGTCTTTAAGAACATGCCAGCCAAGACAGAGCTCATCGTTCGCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-276, + strand, RNAz p=0.508299

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-276, + strand, RNAz p=0.508299

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr19 (15309566-15308666)
               

               
               1-900, gnl|Hg17|chr17 (7743877-7744753)
               

               
               1-900, gnl|Mm7|chr11 (69438713-69437802)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr19 (15309566-15308666)
               

               
               1-900, gnl|Hg17|chr17 (7743877-7744753)
               

               
               1-900, gnl|Mm7|chr11 (69438713-69437802)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               duo (0.172801)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               duo (0.172801)

	1-900, gnl\|bosTau2\|chr19 (15309566-15308666)
	1-900, gnl\|Hg17\|chr17 (7743877-7744753)
	1-900, gnl\|Mm7\|chr11 (69438713-69437802)