Non-Coding RNA Search

Ss1.1-rill322b_h13.5

Sequence:


               
               CCACCCCCTCCTGCCCAGCCCCTTTGCTGCCCTGCACGCCCAGGCTTGTGGGTGAAGCTG
CACGGGAGGGCAGGGAGCACGGCAGGTGCGAGGGTTGGCCATCAGCCCTCACGAGCCCCC
CACTCAGGCCTCCCGGAGGTCCCTGGGTGGGCTCCCACGAGAGGGTAAAAGATGCTCAGG
GAAACACAGGCCTCAGCCGCCTACAGGACCCTCCCTCTGCATTGCAGTGGGGTGAGGTGT
GGCGATATCAGGAGTCAGGGGTGCCTGCTACCCATACTCCTGCTTTTAGGGTGTGTCACT
GCCGAGAAGAGAGCAGTGGGAATTCCCAGCGTGGCGCAGCACAAAGGAATCTGATGAGGA
ACCATGAGGTTTCGGGTTCCATCCCTGGCCTCGCTCAGTGGGTTAAAGATCCGATGTTGC
CATGAGCTGATCCCCCGTGGCTGTGGCTGTGGCAAAGGCAAGCAACTGCAGCCCGGATTG
GGCCCCTGCCCTGGAACCCCGGGTGCGGCCCTAAAGAGCAAAAAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCCCCTCCTGCCCAGCCCCTTTGCTGCCCTGCACGCCCAGGCTTGTGGGTGAAGCTG
CACGGGAGGGCAGGGAGCACGGCAGGTGCGAGGGTTGGCCATCAGCCCTCACGAGCCCCC
CACTCAGGCCTCCCGGAGGTCCCTGGGTGGGCTCCCACGAGAGGGTAAAAGATGCTCAGG
GAAACACAGGCCTCAGCCGCCTACAGGACCCTCCCTCTGCATTGCAGTGGGGTGAGGTGT
GGCGATATCAGGAGTCAGGGGTGCCTGCTACCCATACTCCTGCTTTTAGGGTGTGTCACT
GCCGAGAAGAGAGCAGTGGGAATTCCCAGCGTGGCGCAGCACAAAGGAATCTGATGAGGA
ACCATGAGGTTTCGGGTTCCATCCCTGGCCTCGCTCAGTGGGTTAAAGATCCGATGTTGC
CATGAGCTGATCCCCCGTGGCTGTGGCTGTGGCAAAGGCAAGCAACTGCAGCCCGGATTG
GGCCCCTGCCCTGGAACCCCGGGTGCGGCCCTAAAGAGCAAAAAGGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               7-109, - strand, RNAz p=0.74361

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-109, - strand, RNAz p=0.74361

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               12-100, - strand, RNAmicro p=0.974356

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               12-100, - strand, RNAmicro p=0.974356

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-309, gnl|bosTau2|chr19 (34429472-34429165)
               

               
               1-309, gnl|canFam2|chr9 (25715321-25714840)
               

               
               1-309, gnl|echTel1|scaffold_310535 (67667-68161)
               

               
               1-309, gnl|hg17|chr17 (35604099-35604599)
               

               
               1-309, gnl|Hg17|chr17 (35604199-35604510)
               

               
               1-309, gnl|mm7|chr11 (98960766-98961239)
               

               
               1-309, gnl|Mm7|chr11 (98960839-98961150)
               

               
               1-309, gnl|monDom2|scaffold_18 (49392455-49393045)
               

               
               1-309, gnl|oryCun1|scaffold_79921 (1044-1494)
               

               
               1-309, gnl|panTro1|chr19 (38843770-38844270)
               

               
               1-309, gnl|rheMac2|chr16 (50306055-50306579)
               

               
               1-309, gnl|rn3|chr10 (87635272-87635760)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-309, gnl|bosTau2|chr19 (34429472-34429165)
               

               
               1-309, gnl|canFam2|chr9 (25715321-25714840)
               

               
               1-309, gnl|echTel1|scaffold_310535 (67667-68161)
               

               
               1-309, gnl|hg17|chr17 (35604099-35604599)
               

               
               1-309, gnl|Hg17|chr17 (35604199-35604510)
               

               
               1-309, gnl|mm7|chr11 (98960766-98961239)
               

               
               1-309, gnl|Mm7|chr11 (98960839-98961150)
               

               
               1-309, gnl|monDom2|scaffold_18 (49392455-49393045)
               

               
               1-309, gnl|oryCun1|scaffold_79921 (1044-1494)
               

               
               1-309, gnl|panTro1|chr19 (38843770-38844270)
               

               
               1-309, gnl|rheMac2|chr16 (50306055-50306579)
               

               
               1-309, gnl|rn3|chr10 (87635272-87635760)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               ill (0.175593)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ill (0.175593)

	1-309, gnl\|bosTau2\|chr19 (34429472-34429165)
	1-309, gnl\|canFam2\|chr9 (25715321-25714840)
	1-309, gnl\|echTel1\|scaffold_310535 (67667-68161)
	1-309, gnl\|hg17\|chr17 (35604099-35604599)
	1-309, gnl\|Hg17\|chr17 (35604199-35604510)
	1-309, gnl\|mm7\|chr11 (98960766-98961239)
	1-309, gnl\|Mm7\|chr11 (98960839-98961150)
	1-309, gnl\|monDom2\|scaffold_18 (49392455-49393045)
	1-309, gnl\|oryCun1\|scaffold_79921 (1044-1494)
	1-309, gnl\|panTro1\|chr19 (38843770-38844270)
	1-309, gnl\|rheMac2\|chr16 (50306055-50306579)
	1-309, gnl\|rn3\|chr10 (87635272-87635760)