Non-Coding RNA Search

Ss1.1-rill325b_c17.5

Sequence:


               
               ACTGCTGACCTGTGCCCCACACGGTGGGAGGAGATGAGCCAGGCTTCTGCATCACAATCA
CCTGTTACTGGTGACCAGCTCTGTTTGTTCGGAACCACTCACCTTGACTTTTCCAGCTCT
TGCTACATGGGCTTAAGTGGAGTGTGGGTGACCAGTGGTGGGTACATGCTCAGCACAGAG
TATTTTCAAAATCTTTTTATTTACATTTAAGTCAATTACATGCACGTTTTATATTTTAAA
CAAGAGTAATTAGCAAAATGCATTAAAATTTTAAAATAGCAATTAAATATACAAAAATAT
AGCTTACAAAAAAAATTGCGAATGTTTAAAAATATTCTGCTGCAGAACTCCTAGTGTACA
AACATGTCTATGAAACCTGAGCCTCAGCATTTCATAAACCTTTTTTTGAGGGAGTTATTA
TATCTAGTGAATAAACCCCAATGGGCTTAAACTACAAGACTCATATCCCCTCTTTCTGGC
AATGATCTGTCAAGAGACCAGAGATGACAGTTCAGAAACATTCTTGGAAGACTGAACTGT
TATCAGGAAGGACTTCCTAATACTGGCCCCACCTGCCTCCTGCTCTAACAGGGCCTGGGA
GGAAAGGGGGGGATTCAGGGACCTCGTGCACCTGTCCTGAGGCTCGTACTGGCCCAGGGA
GCTGAGAGGGGCTTCATCGAAGTATAGACAAGTCCCTTGACTCTGATGGGGCCCGCATTC
TAGGAACATGTCCCTGGAGCAGGGAGTCCCTGACACTGTAGCCACAGACGTGAGTACTGG
ATTGGTAAGCCAGGTGTGGTCATGCTTGGTCTAAAAGTGGAATAAAACTCAGCATCTTGG
AACCATTCACATTCTGAAGCTGTACTGGAACAATAAAAGATACACTGAACAAGCTTTTCT
ATTTTCCTTGTAGTCCCAATCAAATGGAAGCACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGCTGACCTGTGCCCCACACGGTGGGAGGAGATGAGCCAGGCTTCTGCATCACAATCA
CCTGTTACTGGTGACCAGCTCTGTTTGTTCGGAACCACTCACCTTGACTTTTCCAGCTCT
TGCTACATGGGCTTAAGTGGAGTGTGGGTGACCAGTGGTGGGTACATGCTCAGCACAGAG
TATTTTCAAAATCTTTTTATTTACATTTAAGTCAATTACATGCACGTTTTATATTTTAAA
CAAGAGTAATTAGCAAAATGCATTAAAATTTTAAAATAGCAATTAAATATACAAAAATAT
AGCTTACAAAAAAAATTGCGAATGTTTAAAAATATTCTGCTGCAGAACTCCTAGTGTACA
AACATGTCTATGAAACCTGAGCCTCAGCATTTCATAAACCTTTTTTTGAGGGAGTTATTA
TATCTAGTGAATAAACCCCAATGGGCTTAAACTACAAGACTCATATCCCCTCTTTCTGGC
AATGATCTGTCAAGAGACCAGAGATGACAGTTCAGAAACATTCTTGGAAGACTGAACTGT
TATCAGGAAGGACTTCCTAATACTGGCCCCACCTGCCTCCTGCTCTAACAGGGCCTGGGA
GGAAAGGGGGGGATTCAGGGACCTCGTGCACCTGTCCTGAGGCTCGTACTGGCCCAGGGA
GCTGAGAGGGGCTTCATCGAAGTATAGACAAGTCCCTTGACTCTGATGGGGCCCGCATTC
TAGGAACATGTCCCTGGAGCAGGGAGTCCCTGACACTGTAGCCACAGACGTGAGTACTGG
ATTGGTAAGCCAGGTGTGGTCATGCTTGGTCTAAAAGTGGAATAAAACTCAGCATCTTGG
AACCATTCACATTCTGAAGCTGTACTGGAACAATAAAAGATACACTGAACAAGCTTTTCT
ATTTTCCTTGTAGTCCCAATCAAATGGAAGCACATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               305-457, - strand, RNAz p=0.860339

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-457, - strand, RNAz p=0.860339

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-936, gnl|bosTau2|chr13 (33912571-33913505)
               

               
               5-936, gnl|Hg17|chr20 (3855776-3856685)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-936, gnl|bosTau2|chr13 (33912571-33913505)
               

               
               5-936, gnl|Hg17|chr20 (3855776-3856685)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               che (0.272628)
               

               
               bla (0.248694)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               bla (0.248694)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               eep (0.122564)

	5-936, gnl\|bosTau2\|chr13 (33912571-33913505)
	5-936, gnl\|Hg17\|chr20 (3855776-3856685)

	che (0.272628)
	bla (0.248694)
	ece (0.229305)
	hea (0.204499)
	aor (0.195274)
	ill (0.175593)
	sin (0.174948)
	fhi (0.169578)
	cki (0.165235)
	cag (0.151194)
	isp (0.150376)
	hlv (0.139256)
	eep (0.122564)