Non-Coding RNA Search

Ss1.1-rill325b_m23.5

Sequence:


               
               GCGGGGGGGGCAGTGTCAGACAGCACCAGGGGACAGGCCTGCTCACTGCCTGCCCAAAGC
GCTGGGAACCACAGATGACACCTTTAGAGAATTGTGACTCTGTTCCCTGCCCCGAGCCCC
CTACCCTTCCACGTGGAAGCGAGGGGAGGTGTGGGGGAAGGAAGGAGAATGGATTTTTAG
CTGTCCTTATCCTCGCACTTGAGGAAAACTTTCAGCCTAGCCCATCCTAGCCCCTGTCCT
CTTAGACGTAGCCCCCTTTCTGGGTGAACTATGGGCTCTGTGCTCCTCAGGCAAATTCTG
ATCTCTAAGAGATCCCCAGACCTCACCCAGCCTTTGCCTCTGTCTCTGCCCCTGACTCCA
CCCTAAGGTCACAGGCACAACAAACGTCTTCATGAAGATATTTTTATTCAACCTGTTTCA
TGCTGTATGGAGGAGGCTGAGTCCATGTAGTGGGCTGTCTTCCCATAATGGGAGTTGGGA
GGCTGATGGGGAAGAGGGCCTTTGGGTTCCCGTGCTGTATGCAGATAAAGGGAGATGAGA
GTTAGGTGGAGGGGAGGGCACAGTGGTTAGCTGAGGTTATTGCTTTTCGTGGCAAACCTA
ATTAAAATGACAGGAGTCTCTTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGGGGGGCAGTGTCAGACAGCACCAGGGGACAGGCCTGCTCACTGCCTGCCCAAAGC
GCTGGGAACCACAGATGACACCTTTAGAGAATTGTGACTCTGTTCCCTGCCCCGAGCCCC
CTACCCTTCCACGTGGAAGCGAGGGGAGGTGTGGGGGAAGGAAGGAGAATGGATTTTTAG
CTGTCCTTATCCTCGCACTTGAGGAAAACTTTCAGCCTAGCCCATCCTAGCCCCTGTCCT
CTTAGACGTAGCCCCCTTTCTGGGTGAACTATGGGCTCTGTGCTCCTCAGGCAAATTCTG
ATCTCTAAGAGATCCCCAGACCTCACCCAGCCTTTGCCTCTGTCTCTGCCCCTGACTCCA
CCCTAAGGTCACAGGCACAACAAACGTCTTCATGAAGATATTTTTATTCAACCTGTTTCA
TGCTGTATGGAGGAGGCTGAGTCCATGTAGTGGGCTGTCTTCCCATAATGGGAGTTGGGA
GGCTGATGGGGAAGAGGGCCTTTGGGTTCCCGTGCTGTATGCAGATAAAGGGAGATGAGA
GTTAGGTGGAGGGGAGGGCACAGTGGTTAGCTGAGGTTATTGCTTTTCGTGGCAAACCTA
ATTAAAATGACAGGAGTCTCTTCAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-297, gnl|bosTau2|chr25 (20097205-20097484)
               

               
               1-297, gnl|Hg17|chr12 (47682948-47682650)
               

               
               1-297, gnl|Mm7|chr15 (98798630-98798356)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-297, gnl|bosTau2|chr25 (20097205-20097484)
               

               
               1-297, gnl|Hg17|chr12 (47682948-47682650)
               

               
               1-297, gnl|Mm7|chr15 (98798630-98798356)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               pty (0.285429)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.285429)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	1-297, gnl\|bosTau2\|chr25 (20097205-20097484)
	1-297, gnl\|Hg17\|chr12 (47682948-47682650)
	1-297, gnl\|Mm7\|chr15 (98798630-98798356)

	pty (0.285429)
	ill (0.175593)
	fbs (0.175346)
	cje (0.165235)
	nco (0.161734)
	cli (0.152812)
	che (0.136314)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)