Non-Coding RNA Search

Ss1.1-rill325b_o1.5

Sequence:


               
               TATCACGGAGGAGCTCCCGCCGCTGCTCCTAGGTGAAGGCGAGCCAAACCACCTCTGCCC
CCTCCGGTATGAGTGGCAAAATTAAAGACCTGCCATGATGATGAAGAGCAAGCCTGAATT
TGTCATTTTCACCTAAAGAAAAATGATAGGCAAAAACCAAACCTGTGGTACAGGACAGGA
TTCCATGCCCTATATGACTTGTCTTGTCCACATACTTGAAGGATGGTTTGGTGTGGAGCA
ATTGGAGGACTATTTGAATTTTGCAAACTATCTCCTGTGGGTTTTTACACCACTAATACT
CTTAATACTTCCTTACTTTACTATTTTTCTTCTCTACCTTACTATTATTTTCTTACACAT
TTATAAGAGGAAGAATGTATTGAGAGAAGCTTATTCTCATAATTTATGGGATGGTGCGAG
GAAGACAGTGGCAACGCTGTGGGATGGACATGCAGCTGTCTGGCACGGTTATGAAGTTCA
TGGAATGGAAAAAATACCGGAAGAAGGACCAGCACTGATAATTTTTTATCATGGAGCTAT
TCCTATAGATTTTTACTACTTCATTCAATTTGTATTTATCCATAAAGGCAGAACTTGCCG
AGGAAAAAGGAATCACTTTGTCTTTAAAATTCCAGGATTTAGTTTGTTACTTGATGTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCACGGAGGAGCTCCCGCCGCTGCTCCTAGGTGAAGGCGAGCCAAACCACCTCTGCCC
CCTCCGGTATGAGTGGCAAAATTAAAGACCTGCCATGATGATGAAGAGCAAGCCTGAATT
TGTCATTTTCACCTAAAGAAAAATGATAGGCAAAAACCAAACCTGTGGTACAGGACAGGA
TTCCATGCCCTATATGACTTGTCTTGTCCACATACTTGAAGGATGGTTTGGTGTGGAGCA
ATTGGAGGACTATTTGAATTTTGCAAACTATCTCCTGTGGGTTTTTACACCACTAATACT
CTTAATACTTCCTTACTTTACTATTTTTCTTCTCTACCTTACTATTATTTTCTTACACAT
TTATAAGAGGAAGAATGTATTGAGAGAAGCTTATTCTCATAATTTATGGGATGGTGCGAG
GAAGACAGTGGCAACGCTGTGGGATGGACATGCAGCTGTCTGGCACGGTTATGAAGTTCA
TGGAATGGAAAAAATACCGGAAGAAGGACCAGCACTGATAATTTTTTATCATGGAGCTAT
TCCTATAGATTTTTACTACTTCATTCAATTTGTATTTATCCATAAAGGCAGAACTTGCCG
AGGAAAAAGGAATCACTTTGTCTTTAAAATTCCAGGATTTAGTTTGTTACTTGATGTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61859074|ref|XP_613617.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859074|ref|XP_613617.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               271-430, - strand, RNAz p=0.992534

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-430, - strand, RNAz p=0.992534

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               72-469, gnl|bosTau2|chr14 (11890075-11890472)
               

               
               72-469, gnl|Hg17|chr8 (56838143-56837746)
               

               
               72-469, gnl|Mm7|chr4 (3496900-3496509)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-469, gnl|bosTau2|chr14 (11890075-11890472)
               

               
               72-469, gnl|Hg17|chr8 (56838143-56837746)
               

               
               72-469, gnl|Mm7|chr4 (3496900-3496509)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               hea (0.204499)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	72-469, gnl\|bosTau2\|chr14 (11890075-11890472)
	72-469, gnl\|Hg17\|chr8 (56838143-56837746)
	72-469, gnl\|Mm7\|chr4 (3496900-3496509)

	hea (0.204499)
	ill (0.175593)
	nco (0.161734)
	spl (0.143184)
	ste (0.135208)
	bla (0.124347)
	spc (0.113366)
	cty (0.10408)