Non-Coding RNA Search

Ss1.1-rill325b_p7.5.5

Sequence:


               
               CCAATCAAACCTCAGGCGATCAAAACTGAAGAAACAAAATCTTAAAGGCTATGGTTTATT
GCAGAGGGTTGGGGAGGGGAGAAGGGAAAGAGGGAGAATGAAGTCAGATAATGCCAGTAG
CCAAAAGGGTAAAGTGGTCTCTGACATTATCCTCTCCAGAGCCTAGAGGTGCACAAGGGA
CATAGGAGCAATTTACACTGACACACAGCTGCTACACCAGTAAAATGAGGCTTTGCCAGC
TTGCACCCACTATGTAACATGCACTCTGTTGATGGCCATGCATCTTCAGTCAGAATTTAT
ATATTCATATGTGCACACATTCCTGGAGTGCATATAACTTAGAACTAAAATCCTTATGGT
TAGATAAAATACCAGAAATATGAGGGAAATAAACTGCAGAGAAATAGCTCAGCCCGAACA
GTGTACTGATCTCAGTTAAGACATCAGATGTGATTTCTTTGCTCCCTTGTGTTCTTTTAA
TGTGGTGATATAGCATTTATAGGTTTGGTGGTGAAGAACAGAAGATAACTGGTGCTGGAT
AGAGGAGCCTTATTTTTTATTATGGCAGCTTGCTATTTTTATAACATGGTGATTGAGTTG
AACACAATCAAAGTACAGTAACTGATCTCCCCTTCTTCCCGGATGAGTGAGCAGATGATG
ATATATTCATCCTCGAACATATCCATATGGGCAATGTTTGGCTACTGCTTCTGTTTGAAA
TGATGCTGTGTTTTGGTTGTGGCCTGAAGCTTTGAAGTGCTACTTGGCATCTCCTTTCTT
CCATGGAGCTCTTAGCATTCAGAAACATCAGAGCTGGTCAAATACTAGTTAGGTCACCTG
AGTCTTGCTTGCCTCTACAGAGTCATCTTTGTATGAATCCAGTGGTGGGTTTTGTTTATT
TTTAAAACGGTTTTTAACTGATGTTCATGAAGAGCAGTGAGTACCTAGAGCTGTGCCACT
AAAGAAAGGATATTCTATCTAAGAAGGTGCATTTCTGTACCAGAGCTGTGTCATAACCAT
CCTTTGGGCCCTCTGCTGGAAAAGTAGAATCAAGTCTCGAATAATGCCTTTTTAATTATA
TCCTCTAGTATTATAGATGTAGGACAGTACTGTATCTACCTCTGTGAATGTAAAATATCT
TGTACCTGCTTTATGATATGTAGTAGTGACTGTGCTTTATCAGAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAATCAAACCTCAGGCGATCAAAACTGAAGAAACAAAATCTTAAAGGCTATGGTTTATT
GCAGAGGGTTGGGGAGGGGAGAAGGGAAAGAGGGAGAATGAAGTCAGATAATGCCAGTAG
CCAAAAGGGTAAAGTGGTCTCTGACATTATCCTCTCCAGAGCCTAGAGGTGCACAAGGGA
CATAGGAGCAATTTACACTGACACACAGCTGCTACACCAGTAAAATGAGGCTTTGCCAGC
TTGCACCCACTATGTAACATGCACTCTGTTGATGGCCATGCATCTTCAGTCAGAATTTAT
ATATTCATATGTGCACACATTCCTGGAGTGCATATAACTTAGAACTAAAATCCTTATGGT
TAGATAAAATACCAGAAATATGAGGGAAATAAACTGCAGAGAAATAGCTCAGCCCGAACA
GTGTACTGATCTCAGTTAAGACATCAGATGTGATTTCTTTGCTCCCTTGTGTTCTTTTAA
TGTGGTGATATAGCATTTATAGGTTTGGTGGTGAAGAACAGAAGATAACTGGTGCTGGAT
AGAGGAGCCTTATTTTTTATTATGGCAGCTTGCTATTTTTATAACATGGTGATTGAGTTG
AACACAATCAAAGTACAGTAACTGATCTCCCCTTCTTCCCGGATGAGTGAGCAGATGATG
ATATATTCATCCTCGAACATATCCATATGGGCAATGTTTGGCTACTGCTTCTGTTTGAAA
TGATGCTGTGTTTTGGTTGTGGCCTGAAGCTTTGAAGTGCTACTTGGCATCTCCTTTCTT
CCATGGAGCTCTTAGCATTCAGAAACATCAGAGCTGGTCAAATACTAGTTAGGTCACCTG
AGTCTTGCTTGCCTCTACAGAGTCATCTTTGTATGAATCCAGTGGTGGGTTTTGTTTATT
TTTAAAACGGTTTTTAACTGATGTTCATGAAGAGCAGTGAGTACCTAGAGCTGTGCCACT
AAAGAAAGGATATTCTATCTAAGAAGGTGCATTTCTGTACCAGAGCTGTGTCATAACCAT
CCTTTGGGCCCTCTGCTGGAAAAGTAGAATCAAGTCTCGAATAATGCCTTTTTAATTATA
TCCTCTAGTATTATAGATGTAGGACAGTACTGTATCTACCTCTGTGAATGTAAAATATCT
TGTACCTGCTTTATGATATGTAGTAGTGACTGTGCTTTATCAGAGCTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-458, gnl|bosTau2|chr16 (27346464-27346920)
               

               
               1-458, gnl|Hg17|chr1 (168292599-168293059)
               

               
               1-458, gnl|Mm7|chr1 (162634673-162634279)
               


               
               742-1114, gnl|bosTau2|chr15 (8678693-8678338)
               

               
               742-1114, gnl|Hg17|chr1 (168287874-168293715)
               

               
               742-1114, gnl|Mm7|chr1 (162639381-162633619)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-458, gnl|bosTau2|chr16 (27346464-27346920)
               

               
               1-458, gnl|Hg17|chr1 (168292599-168293059)
               

               
               1-458, gnl|Mm7|chr1 (162634673-162634279)
               


               
               742-1114, gnl|bosTau2|chr15 (8678693-8678338)
               

               
               742-1114, gnl|Hg17|chr1 (168287874-168293715)
               

               
               742-1114, gnl|Mm7|chr1 (162639381-162633619)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cbl (0.803582)
               

               
               spl (0.429553)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               fat (0.147427)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.803582)
               

               
               spl (0.429553)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               fat (0.147427)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)

	1-458, gnl\|bosTau2\|chr16 (27346464-27346920)
	1-458, gnl\|Hg17\|chr1 (168292599-168293059)
	1-458, gnl\|Mm7\|chr1 (162634673-162634279)

	742-1114, gnl\|bosTau2\|chr15 (8678693-8678338)
	742-1114, gnl\|Hg17\|chr1 (168287874-168293715)
	742-1114, gnl\|Mm7\|chr1 (162639381-162633619)

	cbl (0.803582)
	spl (0.429553)
	eye (0.341006)
	vin (0.332557)
	tes (0.207814)
	hea (0.204499)
	ill (0.175593)
	fat (0.147427)
	ute (0.132784)
	kid (0.129735)
	ebs (0.118301)