Ss1.1-rill328b_g7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATACAGCTACCGACCGCAAGAACCATGCTGTAATGTTTGACACACTCCAGGACTGGTGT TGGGAGCTGGAGCGGACCAAAGGCAACATGAAATACAAAGCAGTGAGTGTCAATGAAGGG TATAAAGTCTGTGAAAGGTTGCCGGCATACTTTGTTGTCCCCACCCCGCTTCCTGAAGAG GATGTGCCACGCTTTCAGGGTCACGGCATACCAATATGGTGTTGGTCCTGCCACAATGGA TGTGCCCTTTTGAAAATGTCAGCACTGCCCAAAGAACAGGATGATGGCATTTTACAGATC CAGAAGAACTTCTTGGATGGAATTTACAAGATCATCCACAGGCCACCCTATGAAATTGTT AAAACTGAAGACCTGTCAAGCAACTTCCTATCCCTGCAGGAAATCCAGACGGCATACTCT AAGTTTAAACAGCTGTTTCTGATAGATAATAGTACCGAATTTTGGGACACAGATATAAAG TGGTTTTCCCTGCTGGAAAGTAGCAGCTGGCTTGACATAATCAGCATTTACAGACATGCC ACCTGCCCACGAAGAGATCCACTCCCTGGACTGTAGGCTAAGGATCGACTTCTAGAGGAG AACGCCTCCGACCTCTGCTGCCTCGTCTCCTCTCTGGTGCAAGTGATGATGGACCCTCAC TGCAGGACCAGGTTTGGTTTCCAGAGTCTTGTCCAGAAGGAGTGGATCATGGGTGGGCAC TGCTTCCTGGATCGCTGCAACCACCTGCGTCAGAGTGACAAGGAGGAGGTTCCCGTGTTC CTGCTCTTCTTAGATTGTGTCTGGCAGCTGGTGCACCAGCATCCCCCAGCATTTGAGTTC ACGGAGACGTACCTGACCGTTTTGTCAGATAGCCTGTACATACCTATTTTTAGTACTTTC TTCTTCAATTCGCCTCATCAAAAAGATACGAACATGGGTAGGGAAAGCCAGGATACACAA GGCAAGCCTTTGAATCTCCTCACCGTGTGGGACTGGTCTGTACAGTTCGAACCCAAGGCC CAGACGTTGCTCAAAAACCCTCTTTACGTGGAAAAGCCAAAACTGGACAAAGGCCAGCGG AAAGGAACGCATTTGAAACATCAACGACAACTTTCTTTGCCACTCACCCAATCTAAATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATACAGCTACCGACCGCAAGAACCATGCTGTAATGTTTGACACACTCCAGGACTGGTGT TGGGAGCTGGAGCGGACCAAAGGCAACATGAAATACAAAGCAGTGAGTGTCAATGAAGGG TATAAAGTCTGTGAAAGGTTGCCGGCATACTTTGTTGTCCCCACCCCGCTTCCTGAAGAG GATGTGCCACGCTTTCAGGGTCACGGCATACCAATATGGTGTTGGTCCTGCCACAATGGA TGTGCCCTTTTGAAAATGTCAGCACTGCCCAAAGAACAGGATGATGGCATTTTACAGATC CAGAAGAACTTCTTGGATGGAATTTACAAGATCATCCACAGGCCACCCTATGAAATTGTT AAAACTGAAGACCTGTCAAGCAACTTCCTATCCCTGCAGGAAATCCAGACGGCATACTCT AAGTTTAAACAGCTGTTTCTGATAGATAATAGTACCGAATTTTGGGACACAGATATAAAG TGGTTTTCCCTGCTGGAAAGTAGCAGCTGGCTTGACATAATCAGCATTTACAGACATGCC ACCTGCCCACGAAGAGATCCACTCCCTGGACTGTAGGCTAAGGATCGACTTCTAGAGGAG AACGCCTCCGACCTCTGCTGCCTCGTCTCCTCTCTGGTGCAAGTGATGATGGACCCTCAC TGCAGGACCAGGTTTGGTTTCCAGAGTCTTGTCCAGAAGGAGTGGATCATGGGTGGGCAC TGCTTCCTGGATCGCTGCAACCACCTGCGTCAGAGTGACAAGGAGGAGGTTCCCGTGTTC CTGCTCTTCTTAGATTGTGTCTGGCAGCTGGTGCACCAGCATCCCCCAGCATTTGAGTTC ACGGAGACGTACCTGACCGTTTTGTCAGATAGCCTGTACATACCTATTTTTAGTACTTTC TTCTTCAATTCGCCTCATCAAAAAGATACGAACATGGGTAGGGAAAGCCAGGATACACAA GGCAAGCCTTTGAATCTCCTCACCGTGTGGGACTGGTCTGTACAGTTCGAACCCAAGGCC CAGACGTTGCTCAAAAACCCTCTTTACGTGGAAAAGCCAAAACTGGACAAAGGCCAGCGG AAAGGAACGCATTTGAAACATCAACGACAACTTTCTTTGCCACTCACCCAATCTAAATCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 767-885, - strand, RNAz p=0.898972 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 767-885, - strand, RNAz p=0.898972 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 6-139, gnl|bosTau2|chr25 (40835742-40835875) | |
| 6-139, gnl|canFam2|chr4 (78388341-78388193) | |
| 6-139, gnl|dasNov1|scaffold_101957 (4856-4728) | |
| 6-139, gnl|hg17|chr5 (32298961-32299109) | |
| 6-139, gnl|Hg17|chr5 (32299107-32298974) | |
| 6-139, gnl|loxAfr1|scaffold_12148 (41776-41924) | |
| 6-139, gnl|mm7|chr15 (12305087-12304944) | |
| 6-139, gnl|Mm7|chr15 (12304944-12305077) | |
| 6-139, gnl|monDom2|scaffold_20 (40721880-40721732) | |
| 6-139, gnl|panTro1|chr4 (97613998-97614146) | |
| 6-139, gnl|rheMac2|chr6 (32363605-32363753) | |
| 6-139, gnl|rn3|chr2 (61633978-61633830) | |
| 214-318, gnl|bosTau2|chr25 (40847768-40847872) | |
| 214-318, gnl|canFam2|chr4 (78403352-78403179) | |
| 214-318, gnl|dasNov1|scaffold_106644 (1371-1194) | |
| 214-318, gnl|echTel1|scaffold_317607 (51609-51430) | |
| 214-318, gnl|galGal2|chrZ_random (8982689-8982872) | |
| 214-318, gnl|hg17|chr5 (32284587-32284756) | |
| 214-318, gnl|Hg17|chr5 (32284741-32284637) | |
| 214-318, gnl|loxAfr1|scaffold_12148 (26713-26894) | |
| 214-318, gnl|mm7|chr15 (12317747-12317572) | |
| 214-318, gnl|Mm7|chr15 (12317589-12317693) | |
| 214-318, gnl|monDom2|scaffold_20 (40728914-40728757) | |
| 214-318, gnl|oryCun1|scaffold_184167 (33949-33776) | |
| 214-318, gnl|panTro1|chr4 (97599905-97600074) | |
| 214-318, gnl|rheMac2|chr6 (32347917-32348086) | |
| 214-318, gnl|rn3|chr2 (61646150-61645971) | |
| 214-318, gnl|xenTro1|scaffold_206 (1275383-1275548) | |
| 322-445, gnl|bosTau2|chr25 (40848517-40848640) | |
| 322-445, gnl|canFam2|chr4 (78404362-78404195) | |
| 322-445, gnl|danRer3|chr5 (50166075-50165910) | |
| 322-445, gnl|dasNov1|scaffold_71853 (4630-4754) | |
| 322-445, gnl|echTel1|scaffold_317607 (52479-52278) | |
| 322-445, gnl|fr1|chrUn (81347440-81347603) | |
| 322-445, gnl|galGal2|chrZ_random (8980546-8980701) | |
| 322-445, gnl|hg17|chr5 (32283861-32284051) | |
| 322-445, gnl|Hg17|chr5 (32283988-32283865) | |
| 322-445, gnl|loxAfr1|scaffold_12148 (25802-26006) | |
| 322-445, gnl|mm7|chr15 (12318510-12318321) | |
| 322-445, gnl|Mm7|chr15 (12318381-12318504) | |
| 322-445, gnl|monDom2|scaffold_20 (40729738-40729565) | |
| 322-445, gnl|panTro1|chr4 (97599180-97599370) | |
| 322-445, gnl|rheMac2|chr6 (32347191-32347381) | |
| 322-445, gnl|rn3|chr2 (61647033-61646843) | |
| 322-445, gnl|xenTro1|scaffold_206 (1274466-1274662) | |
| 767-937, gnl|bosTau2|chr25 (40857414-40857584) | |
| 767-937, gnl|Hg17|chr5 (32270994-32270824) | |
| 767-937, gnl|Mm7|chr15 (12325504-12325674) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-139, gnl|bosTau2|chr25 (40835742-40835875) | |
| 6-139, gnl|canFam2|chr4 (78388341-78388193) | |
| 6-139, gnl|dasNov1|scaffold_101957 (4856-4728) | |
| 6-139, gnl|hg17|chr5 (32298961-32299109) | |
| 6-139, gnl|Hg17|chr5 (32299107-32298974) | |
| 6-139, gnl|loxAfr1|scaffold_12148 (41776-41924) | |
| 6-139, gnl|mm7|chr15 (12305087-12304944) | |
| 6-139, gnl|Mm7|chr15 (12304944-12305077) | |
| 6-139, gnl|monDom2|scaffold_20 (40721880-40721732) | |
| 6-139, gnl|panTro1|chr4 (97613998-97614146) | |
| 6-139, gnl|rheMac2|chr6 (32363605-32363753) | |
| 6-139, gnl|rn3|chr2 (61633978-61633830) | |
| 214-318, gnl|bosTau2|chr25 (40847768-40847872) | |
| 214-318, gnl|canFam2|chr4 (78403352-78403179) | |
| 214-318, gnl|dasNov1|scaffold_106644 (1371-1194) | |
| 214-318, gnl|echTel1|scaffold_317607 (51609-51430) | |
| 214-318, gnl|galGal2|chrZ_random (8982689-8982872) | |
| 214-318, gnl|hg17|chr5 (32284587-32284756) | |
| 214-318, gnl|Hg17|chr5 (32284741-32284637) | |
| 214-318, gnl|loxAfr1|scaffold_12148 (26713-26894) | |
| 214-318, gnl|mm7|chr15 (12317747-12317572) | |
| 214-318, gnl|Mm7|chr15 (12317589-12317693) | |
| 214-318, gnl|monDom2|scaffold_20 (40728914-40728757) | |
| 214-318, gnl|oryCun1|scaffold_184167 (33949-33776) | |
| 214-318, gnl|panTro1|chr4 (97599905-97600074) | |
| 214-318, gnl|rheMac2|chr6 (32347917-32348086) | |
| 214-318, gnl|rn3|chr2 (61646150-61645971) | |
| 214-318, gnl|xenTro1|scaffold_206 (1275383-1275548) | |
| 322-445, gnl|bosTau2|chr25 (40848517-40848640) | |
| 322-445, gnl|canFam2|chr4 (78404362-78404195) | |
| 322-445, gnl|danRer3|chr5 (50166075-50165910) | |
| 322-445, gnl|dasNov1|scaffold_71853 (4630-4754) | |
| 322-445, gnl|echTel1|scaffold_317607 (52479-52278) | |
| 322-445, gnl|fr1|chrUn (81347440-81347603) | |
| 322-445, gnl|galGal2|chrZ_random (8980546-8980701) | |
| 322-445, gnl|hg17|chr5 (32283861-32284051) | |
| 322-445, gnl|Hg17|chr5 (32283988-32283865) | |
| 322-445, gnl|loxAfr1|scaffold_12148 (25802-26006) | |
| 322-445, gnl|mm7|chr15 (12318510-12318321) | |
| 322-445, gnl|Mm7|chr15 (12318381-12318504) | |
| 322-445, gnl|monDom2|scaffold_20 (40729738-40729565) | |
| 322-445, gnl|panTro1|chr4 (97599180-97599370) | |
| 322-445, gnl|rheMac2|chr6 (32347191-32347381) | |
| 322-445, gnl|rn3|chr2 (61647033-61646843) | |
| 322-445, gnl|xenTro1|scaffold_206 (1274466-1274662) | |
| 767-937, gnl|bosTau2|chr25 (40857414-40857584) | |
| 767-937, gnl|Hg17|chr5 (32270994-32270824) | |
| 767-937, gnl|Mm7|chr15 (12325504-12325674) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| eep (0.122564) |