Non-Coding RNA Search

Ss1.1-rill328b_g9.5

Sequence:


               
               TTATTACCCTTTTAAACCACATTTGTCAACCAAAGAGTTTCTGTTGAGTCTCTTGCAAAT
TTTTGATGCAGTGATTATACATAGACAGTTTTATTTGTTTTATAATTTTGAATACTGGTT
TTTACCTATGAAATTTCCTTTTATTAAAATAACATACGAAGAAATCCCTTTACCTCAAAG
AAACAAAACATACTTTGGTTTATAAAACCTTTACTGCTTTTTTTCTACCATGGAGTGGTT
TTACATGTGTGGATTTCTTAGGCCTCTCTTCTTTGAGGCAGAGAGGTAAAATACACATGG
GCAGAGTTACCACATAATAACCTCTCAGGAATTTTTTTTGGAAGGAAGCTTAAAACTCTT
CTGTTTTGGCCAAAGTGAGTCCATTAGGTGATCTTGATTCTTGATTTCAATCTTCAGCCT
TTGTTATTATGGAGCATTATAGTTCATACCGGGTATATAAGATGTTTGGACTCAATTTAA
AATTATAGATAGGGTGTTCCAGGGCTTTTAAATTACTATCAGTGACATTTTCATGGTGGG
AGCTACTTTTTTCCGGTATGGTAGTTACGCTTTCTTATTTTGGTACTTTTTGGTAGTTTT
AGTTGACTTTACAGGCTTTGTAAATTTTGGCACCAGGTCTAATAGTTTAATTTTGTTCTG
TACACTTTTTTAAGTGACTTTTATTTTTTCCATTATAGCTGGCTTATAGGGTTTTGTCAC
TTTTCTACTGTACAGCAAAGTGACCCAGTCACACATCCGAGTACATTTTTTCTCACATTA
TTCTCCATCATAAGTGACTACATATAGTTCCCAGTGCTATACAGCAGGAATGTATCCTTA
AAGAGTAGTTTGGACATCATAGCTGGAGTGGTTATGCTGCCAGATGTGGTGAATACAGTG
ATAAAGAGTATAGGTTTCTGGCTAGCATTTTAGACCTAGCTGGTAACTGGCATGTTGTGA
TTTAAGCAACTTAACATTTCTGAACCTTAGCCTAGTTCTTATCTCGAAAATGACTCACCT
GTTAGGATTGTTGTAAAGATTGAAGCCATTGTAGTTTGGCCTCATAATGTCACAATAAAT
GGTAACAGTGATTAATCAAAGAAAAAAACTGCCAGTTTTGATCTTGCCTAAGGTGGTTTA
TGTGCCAACCCTCCCTGGTTTTGTAATGATGACCTAGACTTTGAGCGGGCGGACAGTGCC
GCTGCAGCTCTTTAGACGGGACGTGGAAGTAGGTGACTGCAGATACGTCTGGCTGAACGG
GCGCCCCGTCCTCCTCCACTGCTTCACGCAGTCCTCCTGACGCCCACTCGAGCTGCCCAC
AGTGGGAGAGAGTACACTTCCTAGAGAGAGGGCACGTTCTTACTGAGGATTTCTAAGTAG
CTGTGCTTCTGTTCAGACCATCAAACAAGGCTTCAAGGTCGAGTGTTTACTGATCACCTC
AACGCATTGTTTCATGAAAAAAATACCAGTCAGTAAAATGATGATGCGGAGATCAGAGGA
AAAAGCCTGTATTTAATATGTACATGTACCACTTCTACTGTTTCTACCCACATTTGGGTG
CTTCCTAAGAGGCGAGTACTTTATCATTGAACTCTCAAAAAAGGCCTAAGCATAGACCTT
ACTTACCTGATTCAAATGAGTGAACTGAGGCTTAGATAGATTGTGCAGCCTTTCCTCAGC
TACCCAGCTAAAAGCTAGTGGGAACGGAGCCACATTTTGTCGGGTTCTGCTGACTGAATG
GGATGCATTATCATGTAGGCGTTTCAGCGCTGCTCAGAGTTTTGTGGTCCTCAGACCAGT
GCCTGGACCACATGTTACGAATACCTTATGTTACTGGTCTGTGAGGAGACAAGTACTTCT
AAAGCAATTTGAGACTAATTTTGTTTCTGTTGAATCTAATAAAAAAATACTGGGGCTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTACCCTTTTAAACCACATTTGTCAACCAAAGAGTTTCTGTTGAGTCTCTTGCAAAT
TTTTGATGCAGTGATTATACATAGACAGTTTTATTTGTTTTATAATTTTGAATACTGGTT
TTTACCTATGAAATTTCCTTTTATTAAAATAACATACGAAGAAATCCCTTTACCTCAAAG
AAACAAAACATACTTTGGTTTATAAAACCTTTACTGCTTTTTTTCTACCATGGAGTGGTT
TTACATGTGTGGATTTCTTAGGCCTCTCTTCTTTGAGGCAGAGAGGTAAAATACACATGG
GCAGAGTTACCACATAATAACCTCTCAGGAATTTTTTTTGGAAGGAAGCTTAAAACTCTT
CTGTTTTGGCCAAAGTGAGTCCATTAGGTGATCTTGATTCTTGATTTCAATCTTCAGCCT
TTGTTATTATGGAGCATTATAGTTCATACCGGGTATATAAGATGTTTGGACTCAATTTAA
AATTATAGATAGGGTGTTCCAGGGCTTTTAAATTACTATCAGTGACATTTTCATGGTGGG
AGCTACTTTTTTCCGGTATGGTAGTTACGCTTTCTTATTTTGGTACTTTTTGGTAGTTTT
AGTTGACTTTACAGGCTTTGTAAATTTTGGCACCAGGTCTAATAGTTTAATTTTGTTCTG
TACACTTTTTTAAGTGACTTTTATTTTTTCCATTATAGCTGGCTTATAGGGTTTTGTCAC
TTTTCTACTGTACAGCAAAGTGACCCAGTCACACATCCGAGTACATTTTTTCTCACATTA
TTCTCCATCATAAGTGACTACATATAGTTCCCAGTGCTATACAGCAGGAATGTATCCTTA
AAGAGTAGTTTGGACATCATAGCTGGAGTGGTTATGCTGCCAGATGTGGTGAATACAGTG
ATAAAGAGTATAGGTTTCTGGCTAGCATTTTAGACCTAGCTGGTAACTGGCATGTTGTGA
TTTAAGCAACTTAACATTTCTGAACCTTAGCCTAGTTCTTATCTCGAAAATGACTCACCT
GTTAGGATTGTTGTAAAGATTGAAGCCATTGTAGTTTGGCCTCATAATGTCACAATAAAT
GGTAACAGTGATTAATCAAAGAAAAAAACTGCCAGTTTTGATCTTGCCTAAGGTGGTTTA
TGTGCCAACCCTCCCTGGTTTTGTAATGATGACCTAGACTTTGAGCGGGCGGACAGTGCC
GCTGCAGCTCTTTAGACGGGACGTGGAAGTAGGTGACTGCAGATACGTCTGGCTGAACGG
GCGCCCCGTCCTCCTCCACTGCTTCACGCAGTCCTCCTGACGCCCACTCGAGCTGCCCAC
AGTGGGAGAGAGTACACTTCCTAGAGAGAGGGCACGTTCTTACTGAGGATTTCTAAGTAG
CTGTGCTTCTGTTCAGACCATCAAACAAGGCTTCAAGGTCGAGTGTTTACTGATCACCTC
AACGCATTGTTTCATGAAAAAAATACCAGTCAGTAAAATGATGATGCGGAGATCAGAGGA
AAAAGCCTGTATTTAATATGTACATGTACCACTTCTACTGTTTCTACCCACATTTGGGTG
CTTCCTAAGAGGCGAGTACTTTATCATTGAACTCTCAAAAAAGGCCTAAGCATAGACCTT
ACTTACCTGATTCAAATGAGTGAACTGAGGCTTAGATAGATTGTGCAGCCTTTCCTCAGC
TACCCAGCTAAAAGCTAGTGGGAACGGAGCCACATTTTGTCGGGTTCTGCTGACTGAATG
GGATGCATTATCATGTAGGCGTTTCAGCGCTGCTCAGAGTTTTGTGGTCCTCAGACCAGT
GCCTGGACCACATGTTACGAATACCTTATGTTACTGGTCTGTGAGGAGACAAGTACTTCT
AAAGCAATTTGAGACTAATTTTGTTTCTGTTGAATCTAATAAAAAAATACTGGGGCTTGT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-667, gnl|bosTau2|chr12 (26201559-26200885)
               

               
               1-667, gnl|Hg17|chr13 (76472901-76473605)
               


               
               833-1907, gnl|bosTau2|chr12 (26200885-26199844)
               

               
               833-1907, gnl|Hg17|chr13 (76473605-76474634)
               

               
               833-1907, gnl|Mm7|chr14 (97509576-97510471)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-667, gnl|bosTau2|chr12 (26201559-26200885)
               

               
               1-667, gnl|Hg17|chr13 (76472901-76473605)
               


               
               833-1907, gnl|bosTau2|chr12 (26200885-26199844)
               

               
               833-1907, gnl|Hg17|chr13 (76473605-76474634)
               

               
               833-1907, gnl|Mm7|chr14 (97509576-97510471)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	1-667, gnl\|bosTau2\|chr12 (26201559-26200885)
	1-667, gnl\|Hg17\|chr13 (76472901-76473605)

	833-1907, gnl\|bosTau2\|chr12 (26200885-26199844)
	833-1907, gnl\|Hg17\|chr13 (76473605-76474634)
	833-1907, gnl\|Mm7\|chr14 (97509576-97510471)

	ece (0.229305)
	hea (0.204499)
	sag (0.182715)
	ill (0.175593)
	ski (0.146735)
	liv (0.146284)
	ova (0.129132)
	sug (0.127291)
	eep (0.122564)
	ecc (0.115035)
	cbl (0.114797)