Non-Coding RNA Search

Ss1.1-rill328b_i3.5

Sequence:


               
               AGAGCTCCATCCTCCTCTCCTTTCGACAAGGTCCTAGAGCTGAGGTGTGGAGCCAGGGCT
GGAGGGCAGAGGTCAAGACCTCACCAGCCACCTCTGGGGTCATGGAACCTGGGAGCAGAA
GCCCCAACCCCCATGAGATCAAGCATCAGTTGGACCTTGGGGTCACCGGGAGGGCAGAGG
TCACCAGCCTCTAAAGAGGTGTGTGTGTGTGTGCGTGCACACGCGCGCGTGTGCGCATGC
AAGCATGGGGGTCGTTTCAGAGGTCAGAGCTCTTGATCTCCTGAGGTGCACCATCGCCCC
CTCTGAGGGCCCCTAGGCCCTTGGCCTGCCTCCCCAAGGGCTCACTAAGCCAGAGGCCAA
AGTGCCCCCCTCCCCTTCACCTCCCACCCAAGTCCTCATGCCCCCTCAGGGCTGGGGGAG
GAGGGGCTGCAGGAAGGGGAGTTGCGTGTACATATTTATCTCCCCTTCTGCGTAGCCCCC
CAGACCTTTTGTACATTTTTACAGGGGTGCCCCTCCCAATAATCCCCCTTCCTGGTTAAT
TAAATCCTCAAGACTGGTGCTGTGTTCCTAGCCTCTGGCCTCTCTGTGGGGGGAGGGGGA
TCGCAGGGGGAAGAGTTGGGAGGGAACAGGCAAGAACCCAGGGCTTGTCCCTGGGAATGG
GGGTCCAGCAGGAGGCAGACCAACAGGGGAGGGGACCTGGGTACCTTGGCTAGAAGGAAG
GGCACCTGCTTCTGCTTGGCTGGCGGCCCGGGTTGCCCCTGGCCTGTTCTCGTTACCTTT
GTGTGCCCTCATCCCCAAAGGCTCAACCTCTCTGCTTCAGATTCCACCTCTTAGTGGCTT
GGTTCCCCCCCCCCAGCCCCCCACTATTTCCAAGTGCCCCCAGGACTCCTGGGCCCTGCT
CTCCGGAACCCTGTTCTCCAGAACCCTCCCTCAAGCTAAGGGGGGCCAAAGAAGGTCACC
ATGTACCACACACCAAAGAAGGGGGTCGGCCCGGGGGTGGGCCACACAGGCAGCTTCTTG
AGCAGCCTCTTGGCAGCAGCTCCAGCCTTCCCAAAGCAGCAGGTGCCCCCGGGCTGGGGC
CCAACCGAGAAAGCAGGGGTCGGTTTAACAAAAACATAACGTTGACTTTTTTCCCCGGTG
GGGCTTATTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCTCCATCCTCCTCTCCTTTCGACAAGGTCCTAGAGCTGAGGTGTGGAGCCAGGGCT
GGAGGGCAGAGGTCAAGACCTCACCAGCCACCTCTGGGGTCATGGAACCTGGGAGCAGAA
GCCCCAACCCCCATGAGATCAAGCATCAGTTGGACCTTGGGGTCACCGGGAGGGCAGAGG
TCACCAGCCTCTAAAGAGGTGTGTGTGTGTGTGCGTGCACACGCGCGCGTGTGCGCATGC
AAGCATGGGGGTCGTTTCAGAGGTCAGAGCTCTTGATCTCCTGAGGTGCACCATCGCCCC
CTCTGAGGGCCCCTAGGCCCTTGGCCTGCCTCCCCAAGGGCTCACTAAGCCAGAGGCCAA
AGTGCCCCCCTCCCCTTCACCTCCCACCCAAGTCCTCATGCCCCCTCAGGGCTGGGGGAG
GAGGGGCTGCAGGAAGGGGAGTTGCGTGTACATATTTATCTCCCCTTCTGCGTAGCCCCC
CAGACCTTTTGTACATTTTTACAGGGGTGCCCCTCCCAATAATCCCCCTTCCTGGTTAAT
TAAATCCTCAAGACTGGTGCTGTGTTCCTAGCCTCTGGCCTCTCTGTGGGGGGAGGGGGA
TCGCAGGGGGAAGAGTTGGGAGGGAACAGGCAAGAACCCAGGGCTTGTCCCTGGGAATGG
GGGTCCAGCAGGAGGCAGACCAACAGGGGAGGGGACCTGGGTACCTTGGCTAGAAGGAAG
GGCACCTGCTTCTGCTTGGCTGGCGGCCCGGGTTGCCCCTGGCCTGTTCTCGTTACCTTT
GTGTGCCCTCATCCCCAAAGGCTCAACCTCTCTGCTTCAGATTCCACCTCTTAGTGGCTT
GGTTCCCCCCCCCCAGCCCCCCACTATTTCCAAGTGCCCCCAGGACTCCTGGGCCCTGCT
CTCCGGAACCCTGTTCTCCAGAACCCTCCCTCAAGCTAAGGGGGGCCAAAGAAGGTCACC
ATGTACCACACACCAAAGAAGGGGGTCGGCCCGGGGGTGGGCCACACAGGCAGCTTCTTG
AGCAGCCTCTTGGCAGCAGCTCCAGCCTTCCCAAAGCAGCAGGTGCCCCCGGGCTGGGGC
CCAACCGAGAAAGCAGGGGTCGGTTTAACAAAAACATAACGTTGACTTTTTTCCCCGGTG
GGGCTTATTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               FBS1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               FBS1_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               37-1002, - strand, RNAz p=0.966947
               

               
               342-540, - strand, RNAz p=0.983977
               

               
               581-730, + strand, RNAz p=0.993605

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-1002, - strand, RNAz p=0.966947
               

               
               342-540, - strand, RNAz p=0.983977
               

               
               581-730, + strand, RNAz p=0.993605

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK021680, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK021680, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-213, gnl|bosTau2|chr18 (26536227-26536430)
               

               
               5-213, gnl|Hg17|chr16 (30588495-30588700)
               

               
               5-213, gnl|Mm7|chr7 (123586867-123587123)
               


               
               342-1152, gnl|bosTau2|chr18 (26536500-26537278)
               

               
               342-1152, gnl|Hg17|chr16 (30588801-30589585)
               

               
               342-1152, gnl|Mm7|chr7 (123587223-123588014)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-213, gnl|bosTau2|chr18 (26536227-26536430)
               

               
               5-213, gnl|Hg17|chr16 (30588495-30588700)
               

               
               5-213, gnl|Mm7|chr7 (123586867-123587123)
               


               
               342-1152, gnl|bosTau2|chr18 (26536500-26537278)
               

               
               342-1152, gnl|Hg17|chr16 (30588801-30589585)
               

               
               342-1152, gnl|Mm7|chr7 (123587223-123588014)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	37-1002, - strand, RNAz p=0.966947
	342-540, - strand, RNAz p=0.983977
	581-730, + strand, RNAz p=0.993605

	5-213, gnl\|bosTau2\|chr18 (26536227-26536430)
	5-213, gnl\|Hg17\|chr16 (30588495-30588700)
	5-213, gnl\|Mm7\|chr7 (123586867-123587123)

	342-1152, gnl\|bosTau2\|chr18 (26536500-26537278)
	342-1152, gnl\|Hg17\|chr16 (30588801-30589585)
	342-1152, gnl\|Mm7\|chr7 (123587223-123588014)