Non-Coding RNA Search

Ss1.1-rill329b_b3.5.5

Sequence:


               
               AATTTCATCTATAAGTGCATGGCTCGGAAATTCCTCCTGGGGCTGAAGAACAACTTGCCA
TCTACCAATGTCTTGGACAAAAAGTGGCCAGCCGCCCCTTACAAGTACTTCAACATGGCT
AACCACGAGCTCCAGAAGCTCTTCCACCAATGGAAGTGCAAGAAATTCCGGGATCAGCTG
TCTCCAAAGCAGATAGAGGTCTTGAGAGAGAAGCTCTGTGCCAGCGAGCTGTTCAAAGGC
AAGAAGGCTTCATACCCCCAGAGTGTCCCTGTTCCATTCCGTGGTGACTACATCGGGCTG
CAAAGAAACCCCAAGCTGCAGAAGCTGAAGGGTGGGGAGGAGGGGCCTGTTCTGGTGGCA
GAGACCGTGATGAAGGTCAATCGTGGCAACGGCAAGACTTCCTCTCGAATTCTCCTCCTG
ACCAAGGGGCATGTGATTATCGCGGACACCAAGAATTCCCAGGCCAAAACTGTCATTGGG
CTGGACAGTGTGGCCGGGGTGTCAGTCACCAGCTTCAAGGATGGGCTGTTTAGTTTGCAT
CTGAGCGAGGTATCATCAGTGGGCTCCAAGGGGGACTTCCTGCTGGTCAGTGAGCATGTG
GTTGAATTGCTGACCAAAATGTACCGGGCTGTGCTGGATGCCACGCAGAGGCAGCTTCCA
ATCACCATGACTGAAGAGTTCTCAGTGAAGTTCAAGGAGGGCAGTGTGGCTGTCAAGGTC
ATCCAGGGCTCTCAGGGTGGTGGGAAAAGCAAGCTGAGCTGCAAGAAGAAGGGGAGTCGT
TGCCTGGAGGTGACTGTACAGTGAGGAGGCACAGCAGTTTCTTCCTCCAGGAGCCGCACC
AGCCCCACCCACCTTTTGCGGGAGGATCTGGTGTGTGAACCCCCTGATGGGGAGTGGAGC
TCAGAGATTGAAGATCCCTTGAAGAGGGCGTGCTTCTCCCAAACCTTTCCGGTCCTCTTT
CCAGACTTAGCTTCCTCCTACCCTCAGCCTTCACCCACTAATAAAACAAGAGACTTTGCA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTCATCTATAAGTGCATGGCTCGGAAATTCCTCCTGGGGCTGAAGAACAACTTGCCA
TCTACCAATGTCTTGGACAAAAAGTGGCCAGCCGCCCCTTACAAGTACTTCAACATGGCT
AACCACGAGCTCCAGAAGCTCTTCCACCAATGGAAGTGCAAGAAATTCCGGGATCAGCTG
TCTCCAAAGCAGATAGAGGTCTTGAGAGAGAAGCTCTGTGCCAGCGAGCTGTTCAAAGGC
AAGAAGGCTTCATACCCCCAGAGTGTCCCTGTTCCATTCCGTGGTGACTACATCGGGCTG
CAAAGAAACCCCAAGCTGCAGAAGCTGAAGGGTGGGGAGGAGGGGCCTGTTCTGGTGGCA
GAGACCGTGATGAAGGTCAATCGTGGCAACGGCAAGACTTCCTCTCGAATTCTCCTCCTG
ACCAAGGGGCATGTGATTATCGCGGACACCAAGAATTCCCAGGCCAAAACTGTCATTGGG
CTGGACAGTGTGGCCGGGGTGTCAGTCACCAGCTTCAAGGATGGGCTGTTTAGTTTGCAT
CTGAGCGAGGTATCATCAGTGGGCTCCAAGGGGGACTTCCTGCTGGTCAGTGAGCATGTG
GTTGAATTGCTGACCAAAATGTACCGGGCTGTGCTGGATGCCACGCAGAGGCAGCTTCCA
ATCACCATGACTGAAGAGTTCTCAGTGAAGTTCAAGGAGGGCAGTGTGGCTGTCAAGGTC
ATCCAGGGCTCTCAGGGTGGTGGGAAAAGCAAGCTGAGCTGCAAGAAGAAGGGGAGTCGT
TGCCTGGAGGTGACTGTACAGTGAGGAGGCACAGCAGTTTCTTCCTCCAGGAGCCGCACC
AGCCCCACCCACCTTTTGCGGGAGGATCTGGTGTGTGAACCCCCTGATGGGGAGTGGAGC
TCAGAGATTGAAGATCCCTTGAAGAGGGCGTGCTTCTCCCAAACCTTTCCGGTCCTCTTT
CCAGACTTAGCTTCCTCCTACCCTCAGCCTTCACCCACTAATAAAACAAGAGACTTTGCA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               434-555, + strand, RNAz p=0.782757

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-555, + strand, RNAz p=0.782757

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               395-555, gnl|bosTau2|chr5 (32657083-32657243)
               

               
               395-555, gnl|Hg17|chr12 (55709640-55709480)
               

               
               395-555, gnl|Mm7|chr10 (127221254-127221414)
               


               
               678-1022, gnl|bosTau2|chr5 (32657825-32658182)
               

               
               678-1022, gnl|Hg17|chr12 (55708932-55708574)
               

               
               678-1022, gnl|Mm7|chr10 (127221981-127222314)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               395-555, gnl|bosTau2|chr5 (32657083-32657243)
               

               
               395-555, gnl|Hg17|chr12 (55709640-55709480)
               

               
               395-555, gnl|Mm7|chr10 (127221254-127221414)
               


               
               678-1022, gnl|bosTau2|chr5 (32657825-32658182)
               

               
               678-1022, gnl|Hg17|chr12 (55708932-55708574)
               

               
               678-1022, gnl|Mm7|chr10 (127221981-127222314)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               cje (0.660939)
               

               
               ill (0.526778)
               

               
               jej (0.494609)
               

               
               duo (0.172801)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.660939)
               

               
               ill (0.526778)
               

               
               jej (0.494609)
               

               
               duo (0.172801)

	395-555, gnl\|bosTau2\|chr5 (32657083-32657243)
	395-555, gnl\|Hg17\|chr12 (55709640-55709480)
	395-555, gnl\|Mm7\|chr10 (127221254-127221414)

	678-1022, gnl\|bosTau2\|chr5 (32657825-32658182)
	678-1022, gnl\|Hg17\|chr12 (55708932-55708574)
	678-1022, gnl\|Mm7\|chr10 (127221981-127222314)