Ss1.1-rill329b_e13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGACAGGAAAGGAAGTGCCAGTTCTCTCGAGGAATGGTATGACCAGGATAAGCCAGAA GTGTCCCTCCTCTTCCAGTTCCTACAGATCCTCACAGCCTGCTTTGGGTCATTCGCCCAT GGTGGCAATGACGTCAGCAATGCCATCGGTCCTCTGGTTGCTTTGTATCTGGTTTACGAT ACGGGAGACGTTTCTTCAAAAGTAGCAACACCAATATGGCTTCTGCTCTATGGTGGTGTT GGTATCTGCATTGGTCTGTGGGTATGGGGAAGGAGAGTTATCCAGACCATGGGCAAAGAT CTGACGCCAATCACACCCTCTAGGTAAGTTAGTAAAGTAAATGTTAGGTTACTCCTCATT TTCTTAAGATGCTGTGCAGTGCTACCACACACATTC------------------------ ------------------------------------------------------------ ------------------------TTACTCTTTAGTATAAGTTGTGATGTTCTCTTGGTT GGTTTTTACTTATTGTCTGGCCCTTAAACATAAGGTTTTCTCTGTTCCACTCCAGTGGAC TCTTGAGAAAGATTATGTGGTAAGACTATATAGCTATGTGTGCTTAACATTTATTTTTCT TTATGGAACTAACTGATGTTTACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGACAGGAAAGGAAGTGCCAGTTCTCTCGAGGAATGGTATGACCAGGATAAGCCAGAA GTGTCCCTCCTCTTCCAGTTCCTACAGATCCTCACAGCCTGCTTTGGGTCATTCGCCCAT GGTGGCAATGACGTCAGCAATGCCATCGGTCCTCTGGTTGCTTTGTATCTGGTTTACGAT ACGGGAGACGTTTCTTCAAAAGTAGCAACACCAATATGGCTTCTGCTCTATGGTGGTGTT GGTATCTGCATTGGTCTGTGGGTATGGGGAAGGAGAGTTATCCAGACCATGGGCAAAGAT CTGACGCCAATCACACCCTCTAGGTAAGTTAGTAAAGTAAATGTTAGGTTACTCCTCATT TTCTTAAGATGCTGTGCAGTGCTACCACACACATTC------------------------ ------------------------------------------------------------ ------------------------TTACTCTTTAGTATAAGTTGTGATGTTCTCTTGGTT GGTTTTTACTTATTGTCTGGCCCTTAAACATAAGGTTTTCTCTGTTCCACTCCAGTGGAC TCTTGAGAAAGATTATGTGGTAAGACTATATAGCTATGTGTGCTTAACATTTATTTTTCT TTATGGAACTAACTGATGTTTACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 135-293, + strand, RNAz p=0.903714 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 135-293, + strand, RNAz p=0.903714 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 135-370, gnl|bosTau2|chr11 (33389996-33389760) | |
| 135-370, gnl|canFam2|chr17 (39988595-39988806) | |
| 135-370, gnl|danRer3|chrNA (166156702-166156877) | |
| 135-370, gnl|danRer3|chrNA (166156898-166156696) | |
| 135-370, gnl|dasNov1|scaffold_4113 (33096-33302) | |
| 135-370, gnl|echTel1|scaffold_307392 (6093-6269) | |
| 135-370, gnl|echTel1|scaffold_307392 (6300-6088) | |
| 135-370, gnl|fr1|chrUn (48402277-48402075) | |
| 135-370, gnl|galGal2|chr4 (34697977-34698179) | |
| 135-370, gnl|hg17|chr14 (105707500-105707671) | |
| 135-370, gnl|hg17|chr2 (113134172-113134384) | |
| 135-370, gnl|Hg17|chr2 (113134192-113134595) | |
| 135-370, gnl|loxAfr1|scaffold_1496 (17902-18065) | |
| 135-370, gnl|loxAfr1|scaffold_1496 (18096-17902) | |
| 135-370, gnl|mm7|chr2 (128950075-128949902) | |
| 135-370, gnl|mm7|chr2 (128949872-128950080) | |
| 135-370, gnl|Mm7|chr2 (128949891-128950268) | |
| 135-370, gnl|monDom2|scaffold_63 (6528385-6528561) | |
| 135-370, gnl|monDom2|scaffold_63 (6528592-6528380) | |
| 135-370, gnl|oryCun1|scaffold_172498 (10540-10716) | |
| 135-370, gnl|oryCun1|scaffold_172498 (10740-10535) | |
| 135-370, gnl|panTro1|chr12 (116267815-116268027) | |
| 135-370, gnl|panTro1|chr16_random (2772697-2772869) | |
| 135-370, gnl|rheMac2|chr13 (112019694-112019518) | |
| 135-370, gnl|rheMac2|chr13 (112019487-112019699) | |
| 135-370, gnl|rn3|chr3 (116731388-116731213) | |
| 135-370, gnl|rn3|chr3 (116731182-116731394) | |
| 135-370, gnl|tetNig1|chr4 (1362103-1361927) | |
| 135-370, gnl|tetNig1|chr4 (1361906-1362108) | |
| 135-370, gnl|xenTro1|scaffold_217 (949006-948831) | |
| 135-370, gnl|xenTro1|scaffold_217 (948804-949012) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 135-370, gnl|bosTau2|chr11 (33389996-33389760) | |
| 135-370, gnl|canFam2|chr17 (39988595-39988806) | |
| 135-370, gnl|danRer3|chrNA (166156702-166156877) | |
| 135-370, gnl|danRer3|chrNA (166156898-166156696) | |
| 135-370, gnl|dasNov1|scaffold_4113 (33096-33302) | |
| 135-370, gnl|echTel1|scaffold_307392 (6093-6269) | |
| 135-370, gnl|echTel1|scaffold_307392 (6300-6088) | |
| 135-370, gnl|fr1|chrUn (48402277-48402075) | |
| 135-370, gnl|galGal2|chr4 (34697977-34698179) | |
| 135-370, gnl|hg17|chr14 (105707500-105707671) | |
| 135-370, gnl|hg17|chr2 (113134172-113134384) | |
| 135-370, gnl|Hg17|chr2 (113134192-113134595) | |
| 135-370, gnl|loxAfr1|scaffold_1496 (17902-18065) | |
| 135-370, gnl|loxAfr1|scaffold_1496 (18096-17902) | |
| 135-370, gnl|mm7|chr2 (128950075-128949902) | |
| 135-370, gnl|mm7|chr2 (128949872-128950080) | |
| 135-370, gnl|Mm7|chr2 (128949891-128950268) | |
| 135-370, gnl|monDom2|scaffold_63 (6528385-6528561) | |
| 135-370, gnl|monDom2|scaffold_63 (6528592-6528380) | |
| 135-370, gnl|oryCun1|scaffold_172498 (10540-10716) | |
| 135-370, gnl|oryCun1|scaffold_172498 (10740-10535) | |
| 135-370, gnl|panTro1|chr12 (116267815-116268027) | |
| 135-370, gnl|panTro1|chr16_random (2772697-2772869) | |
| 135-370, gnl|rheMac2|chr13 (112019694-112019518) | |
| 135-370, gnl|rheMac2|chr13 (112019487-112019699) | |
| 135-370, gnl|rn3|chr3 (116731388-116731213) | |
| 135-370, gnl|rn3|chr3 (116731182-116731394) | |
| 135-370, gnl|tetNig1|chr4 (1362103-1361927) | |
| 135-370, gnl|tetNig1|chr4 (1361906-1362108) | |
| 135-370, gnl|xenTro1|scaffold_217 (949006-948831) | |
| 135-370, gnl|xenTro1|scaffold_217 (948804-949012) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) |