Non-Coding RNA Search

Ss1.1-rill330b_j2.5

Sequence:


               
               GTTCTCTCACGGTCAGTCCCCCAGGAGCCCCATTAGCCCGGAACTGCACTCGGCCCCCCT
CACTCCTGTGGCTCGGGACACTCTACGACACCTGGCCAGCGAAGACACCCGATGCTCCAC
ACCGGAGCTGGGGCTGGATGAACAGTCTGTCCAGCCATGGGAGCGGCGAACCTTCCCCCT
GGCGGGCAGTCCCCAGGCAGAGTGTGAGGACCAACTGGATGCACAGGAACGGGCGTCCCG
CTGCACTCGGCGCACCTCATGCAGCAAGACTGGCCGGGAGACAGAGGGGGCGCCCACCTC
GCCTCCCGTCGTTCCCCTCAAGAGTCGGCATCTGGCGGCAACAGTCACAGCTCAGCGTCC
AGCTCACAGATGAGTGGGATCCGAGCATCTAAACAGACTCACAAACTATTGGCATTAAAG
CTTCAGAAATCTCTGCGTTTGATATTCAAACATCATATGCCGAAAATTTTCACAGTTTTT
AGTGAATTTAAGGAATTTAGATTCTACTTTTTTTTCCCTTGTTTTGATTTTTGTTTTTGT
TTTGGTTTCCATGTTTTATCGTCACACACCTGAGCACTTCCTCCAGTTGGCAAACAGAAG
TTCAGGATGAGACCTTGCTGACCGGGTCCTGGCGTCCTCTGCACTGTTGAACCACTGGAC
TTGGCCGTGTTGGATGATCACCCCTCTCCCTTGCACCTGTGGGCAGGGTGGGACAGCCAG
GTAGGCAGAGGGAAAGGAACCGCCAGCTCAGCACGGCCACCTCGGGTGAGGCTGGGAGAG
AACAGCGTGTTCTGGGCCCTTCCCCTTCCCCTCTGTGGCTTGGCTCAGCTGTGGCCTCCC
GGCGGGGTCCCCTTGGTCGTCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTCTCACGGTCAGTCCCCCAGGAGCCCCATTAGCCCGGAACTGCACTCGGCCCCCCT
CACTCCTGTGGCTCGGGACACTCTACGACACCTGGCCAGCGAAGACACCCGATGCTCCAC
ACCGGAGCTGGGGCTGGATGAACAGTCTGTCCAGCCATGGGAGCGGCGAACCTTCCCCCT
GGCGGGCAGTCCCCAGGCAGAGTGTGAGGACCAACTGGATGCACAGGAACGGGCGTCCCG
CTGCACTCGGCGCACCTCATGCAGCAAGACTGGCCGGGAGACAGAGGGGGCGCCCACCTC
GCCTCCCGTCGTTCCCCTCAAGAGTCGGCATCTGGCGGCAACAGTCACAGCTCAGCGTCC
AGCTCACAGATGAGTGGGATCCGAGCATCTAAACAGACTCACAAACTATTGGCATTAAAG
CTTCAGAAATCTCTGCGTTTGATATTCAAACATCATATGCCGAAAATTTTCACAGTTTTT
AGTGAATTTAAGGAATTTAGATTCTACTTTTTTTTCCCTTGTTTTGATTTTTGTTTTTGT
TTTGGTTTCCATGTTTTATCGTCACACACCTGAGCACTTCCTCCAGTTGGCAAACAGAAG
TTCAGGATGAGACCTTGCTGACCGGGTCCTGGCGTCCTCTGCACTGTTGAACCACTGGAC
TTGGCCGTGTTGGATGATCACCCCTCTCCCTTGCACCTGTGGGCAGGGTGGGACAGCCAG
GTAGGCAGAGGGAAAGGAACCGCCAGCTCAGCACGGCCACCTCGGGTGAGGCTGGGAGAG
AACAGCGTGTTCTGGGCCCTTCCCCTTCCCCTCTGTGGCTTGGCTCAGCTGTGGCCTCCC
GGCGGGGTCCCCTTGGTCGTCGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5911949|emb|CAB55949.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5911949|emb|CAB55949.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               261-380, - strand, RNAz p=0.770646
               

               
               421-534, + strand, RNAz p=0.777417

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               261-380, - strand, RNAz p=0.770646
               

               
               421-534, + strand, RNAz p=0.777417

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015443, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015443, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               142-859, gnl|bosTau2|chr19 (41937366-41938091)
               

               
               142-859, gnl|Hg17|chr17 (41464920-41464205)
               

               
               142-859, gnl|Mm7|chr11 (104444250-104443559)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-859, gnl|bosTau2|chr19 (41937366-41938091)
               

               
               142-859, gnl|Hg17|chr17 (41464920-41464205)
               

               
               142-859, gnl|Mm7|chr11 (104444250-104443559)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

	261-380, - strand, RNAz p=0.770646
	421-534, + strand, RNAz p=0.777417

	142-859, gnl\|bosTau2\|chr19 (41937366-41938091)
	142-859, gnl\|Hg17\|chr17 (41464920-41464205)
	142-859, gnl\|Mm7\|chr11 (104444250-104443559)