Non-Coding RNA Search

Ss1.1-rill330b_m12.5

Sequence:


               
               CCACAGGCCCTTCAGCATGTCGATGGAGTCCCCTGAAAGGCATCCAAAAGGCTTCCGACC
CTGGTGGGACCAGCGAGGAGGTGATAAAACAGTAACGGAACCCTGAAGTGCACAGACCAA
GGGATGTAATTGGAAAGGCATCTATTTTTGTGATGAAGCTATAAAATTAGCATTTAAATA
TCCCCTTCCCTTCTCCCTGCTTCCCCTTAACCCCCCATGGTACTTCCTCCTTTCCTGGAG
GCCAGCCTCTTTCTGAAAGGCATTGGCCTCACTTCTATCAGCTGGGGCCTGACGTTCCAT
CTCTGGGCTGGTGGAGAGGATGGAAAGATGTGGTTGGGAGGCTTCTGAATTCGGGAGGTG
GGGGAGGGGGGAGGGGGACAGAATCCCATTCTTTTTACATCACTGTGAGGGAGCTCCAGG
CCCTGTCCCTGGAGAGATCATTGCTGCGCAGAAGTCACAGGCCATACTGGGCAGTTCTGG
TACAAGCCTGCCCTTGAAAATAATAATAATGATGATAATAATAACTCCACTTGCATAGAG
CTATCACTCATTCCTGCCAACCTCGTGTCCCCTAACCCGAGCTTTGGGATGGCCCGAACC
ACTGGCCTTTGCAACTGTTGGCAGGCATGGGTTCTTCTAGTCACTTCTGGAGATCTTCAG
AGGCTGCCCCCTGGGAGTACCCCTAACTTGGGAGAGAGCGGCCAGGTTGCCAATACAGTC
AAACTCCTGACACCGTCTTAACCAGCAATGGTGACCCGGAAGATATGGCTGCCTCCAGTC
ACCCCAGAAAGCAGCCCAGGGCATCCCACGGTCACCTATGCTATCACACTGCTCTTGGGA
TTACAACCTCCATTTCTGTCTCCAGCTGACTTTTCTCCACCCAGATCCCAATAATAAACG
GATCCATGGATGATAATTAAGAGAAGAGAAAAAAAATATTATTTTGGTTAGGACAGACCA
TCGTAGATTTTTAGCAATGTGTATCTGTGTGTCCCTCACACCTTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACAGGCCCTTCAGCATGTCGATGGAGTCCCCTGAAAGGCATCCAAAAGGCTTCCGACC
CTGGTGGGACCAGCGAGGAGGTGATAAAACAGTAACGGAACCCTGAAGTGCACAGACCAA
GGGATGTAATTGGAAAGGCATCTATTTTTGTGATGAAGCTATAAAATTAGCATTTAAATA
TCCCCTTCCCTTCTCCCTGCTTCCCCTTAACCCCCCATGGTACTTCCTCCTTTCCTGGAG
GCCAGCCTCTTTCTGAAAGGCATTGGCCTCACTTCTATCAGCTGGGGCCTGACGTTCCAT
CTCTGGGCTGGTGGAGAGGATGGAAAGATGTGGTTGGGAGGCTTCTGAATTCGGGAGGTG
GGGGAGGGGGGAGGGGGACAGAATCCCATTCTTTTTACATCACTGTGAGGGAGCTCCAGG
CCCTGTCCCTGGAGAGATCATTGCTGCGCAGAAGTCACAGGCCATACTGGGCAGTTCTGG
TACAAGCCTGCCCTTGAAAATAATAATAATGATGATAATAATAACTCCACTTGCATAGAG
CTATCACTCATTCCTGCCAACCTCGTGTCCCCTAACCCGAGCTTTGGGATGGCCCGAACC
ACTGGCCTTTGCAACTGTTGGCAGGCATGGGTTCTTCTAGTCACTTCTGGAGATCTTCAG
AGGCTGCCCCCTGGGAGTACCCCTAACTTGGGAGAGAGCGGCCAGGTTGCCAATACAGTC
AAACTCCTGACACCGTCTTAACCAGCAATGGTGACCCGGAAGATATGGCTGCCTCCAGTC
ACCCCAGAAAGCAGCCCAGGGCATCCCACGGTCACCTATGCTATCACACTGCTCTTGGGA
TTACAACCTCCATTTCTGTCTCCAGCTGACTTTTCTCCACCCAGATCCCAATAATAAACG
GATCCATGGATGATAATTAAGAGAAGAGAAAAAAAATATTATTTTGGTTAGGACAGACCA
TCGTAGATTTTTAGCAATGTGTATCTGTGTGTCCCTCACACCTTTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-320, - strand, RNAz p=0.97059

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-320, - strand, RNAz p=0.97059

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1008, gnl|bosTau2|chr3 (5172024-5171038)
               

               
               4-1008, gnl|Hg17|chr1 (154882040-154883004)
               

               
               4-1008, gnl|Mm7|chr3 (87192417-87191569)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1008, gnl|bosTau2|chr3 (5172024-5171038)
               

               
               4-1008, gnl|Hg17|chr1 (154882040-154883004)
               

               
               4-1008, gnl|Mm7|chr3 (87192417-87191569)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               clu (0.239292)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)

	4-1008, gnl\|bosTau2\|chr3 (5172024-5171038)
	4-1008, gnl\|Hg17\|chr1 (154882040-154883004)
	4-1008, gnl\|Mm7\|chr3 (87192417-87191569)

	clu (0.239292)
	ill (0.175593)
	eye (0.170503)
	che (0.136314)
	ste (0.135208)
	nmm (0.132802)
	ese (0.126502)
	bla (0.124347)
	med (0.116252)