Non-Coding RNA Search

Ss1.1-rill330b_n15.5

Sequence:


               
               GGAGGGGTGGGCAGGCACTGAGAAGCCGTCCTCTCAGTTCTGCGGAGAAGTCAGCCCCCG
CCGCCCGTGCCTTCCTGGATGCCATACGGCTCTACCGGCAGCAGCGAGGCCATTTTGGCG
ACGACGACGCGACCCTGGGCTCAGATGCCGAGGTGCTGACTGCGGTACTGATGCGGCAAC
TGCTGCCTGAGCTGCGATCCCAGACTCTGCCCGGCCTGCGGGAGTCCGGCCGCGCCCGGG
CCTGGTCCTGGACCAAGCTCCTGGACGCTGTCCACGCTGCAGTCCTGGCCGGGGCCTCCG
CGGGGCTCCGCGCCTTCCAGCCCGAAAAGGACGAGCTTCTCGTGGCTCTGGAGAGAACGA
TCCGACCTGACGTGGAACAGATGTTGCAGCTGCAAGCGCGGGTGGCTGGGAGGCTTCAGG
CCGAGGTCCAGGGTCCCCTCGAATCGTGCCTGCGCAGGAAGGTGGATATGCAGCTGCCCC
GGGTCACGCAGACGCTGCTGAGCACCTTGGAAGCCGAACTCACGGTGGTGCAGACCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGGGTGGGCAGGCACTGAGAAGCCGTCCTCTCAGTTCTGCGGAGAAGTCAGCCCCCG
CCGCCCGTGCCTTCCTGGATGCCATACGGCTCTACCGGCAGCAGCGAGGCCATTTTGGCG
ACGACGACGCGACCCTGGGCTCAGATGCCGAGGTGCTGACTGCGGTACTGATGCGGCAAC
TGCTGCCTGAGCTGCGATCCCAGACTCTGCCCGGCCTGCGGGAGTCCGGCCGCGCCCGGG
CCTGGTCCTGGACCAAGCTCCTGGACGCTGTCCACGCTGCAGTCCTGGCCGGGGCCTCCG
CGGGGCTCCGCGCCTTCCAGCCCGAAAAGGACGAGCTTCTCGTGGCTCTGGAGAGAACGA
TCCGACCTGACGTGGAACAGATGTTGCAGCTGCAAGCGCGGGTGGCTGGGAGGCTTCAGG
CCGAGGTCCAGGGTCCCCTCGAATCGTGCCTGCGCAGGAAGGTGGATATGCAGCTGCCCC
GGGTCACGCAGACGCTGCTGAGCACCTTGGAAGCCGAACTCACGGTGGTGCAGACCCTTC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-154, gnl|bosTau2|chr7 (4857714-4857560)
               

               
               1-154, gnl|Hg17|chr19 (17510921-17511076)
               

               
               1-154, gnl|Mm7|chr8 (70069527-70069651)
               


               
               256-433, gnl|bosTau2|chr7 (4857180-4857003)
               

               
               256-433, gnl|canFam2|chr20 (48286763-48286306)
               

               
               256-433, gnl|hg17|chr19 (17511280-17511750)
               

               
               256-433, gnl|Hg17|chr19 (17511410-17511587)
               

               
               256-433, gnl|loxAfr1|scaffold_166174 (4836-4341)
               

               
               256-433, gnl|mm7|chr8 (70069846-70070252)
               

               
               256-433, gnl|Mm7|chr8 (70069923-70070107)
               

               
               256-433, gnl|rheMac2|chr19 (17096825-17097318)
               

               
               256-433, gnl|rn3|chr16 (18803541-18803945)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr7 (4857714-4857560)
               

               
               1-154, gnl|Hg17|chr19 (17510921-17511076)
               

               
               1-154, gnl|Mm7|chr8 (70069527-70069651)
               


               
               256-433, gnl|bosTau2|chr7 (4857180-4857003)
               

               
               256-433, gnl|canFam2|chr20 (48286763-48286306)
               

               
               256-433, gnl|hg17|chr19 (17511280-17511750)
               

               
               256-433, gnl|Hg17|chr19 (17511410-17511587)
               

               
               256-433, gnl|loxAfr1|scaffold_166174 (4836-4341)
               

               
               256-433, gnl|mm7|chr8 (70069846-70070252)
               

               
               256-433, gnl|Mm7|chr8 (70069923-70070107)
               

               
               256-433, gnl|rheMac2|chr19 (17096825-17097318)
               

               
               256-433, gnl|rn3|chr16 (18803541-18803945)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ill (0.175593)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               ebs (0.118301)

	1-154, gnl\|bosTau2\|chr7 (4857714-4857560)
	1-154, gnl\|Hg17\|chr19 (17510921-17511076)
	1-154, gnl\|Mm7\|chr8 (70069527-70069651)

	256-433, gnl\|bosTau2\|chr7 (4857180-4857003)
	256-433, gnl\|canFam2\|chr20 (48286763-48286306)
	256-433, gnl\|hg17\|chr19 (17511280-17511750)
	256-433, gnl\|Hg17\|chr19 (17511410-17511587)
	256-433, gnl\|loxAfr1\|scaffold_166174 (4836-4341)
	256-433, gnl\|mm7\|chr8 (70069846-70070252)
	256-433, gnl\|Mm7\|chr8 (70069923-70070107)
	256-433, gnl\|rheMac2\|chr19 (17096825-17097318)
	256-433, gnl\|rn3\|chr16 (18803541-18803945)