Ss1.1-rill332b_g15.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGGGAATTCGGATTCCTGTTGGACATGTGGACTACTTCGTCAATGGAGGCCAAGACCA ACCTGGCTGTCCCACCTTCATTCATGCAGGCTACAGTTATCTGATCTGTGATCACATGAG GGCTGTACACCTCTACGTCAGTGCCCTGGAGAATTCCTGTCCTTTGATGGCCTTTCCTTG TACCAGCTACAAGGCCTTCCTTGCTGGACACTGTCTGGATTGTTTCAATCCTTTTCTGCT TTCCTGTCCAAGGATTGGGCTGGTGGAACAAGGTGGTGTCCAGATAGAGCCACTTCCCAA GGAAGTGCCTGTCTACCTCATGACCACTTCCAAGGCTCCATACTGTGTGCATCACAGCCT CGTGGAGTTTTACTTGCAGGAGCCAAGAAACAAGGACACCTGCATCACGGTCACCTTCCT TAGCAGCAATGTCACCTCCTCAGTCAAGATCACCATACCTAGGCAGCAACACCAGGGGAA AGGAATCATAGCTCACCCCAGTCCTCAGTGCCAGATAAACCAAGTCAAACTCAAGCTTCA GGCTTCCCACCGGGTTTGGAAAAAAGACCGGACTACTATTATCGGAAAGTTCTGCACTGC TCCTTTGCCTGTCAATGACAATAAAAAGACGGTCTGCTTACCTGAGCCAGTGAACTTACA AGCAAGTGAGACTGTTTCTCATGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGGGAATTCGGATTCCTGTTGGACATGTGGACTACTTCGTCAATGGAGGCCAAGACCA ACCTGGCTGTCCCACCTTCATTCATGCAGGCTACAGTTATCTGATCTGTGATCACATGAG GGCTGTACACCTCTACGTCAGTGCCCTGGAGAATTCCTGTCCTTTGATGGCCTTTCCTTG TACCAGCTACAAGGCCTTCCTTGCTGGACACTGTCTGGATTGTTTCAATCCTTTTCTGCT TTCCTGTCCAAGGATTGGGCTGGTGGAACAAGGTGGTGTCCAGATAGAGCCACTTCCCAA GGAAGTGCCTGTCTACCTCATGACCACTTCCAAGGCTCCATACTGTGTGCATCACAGCCT CGTGGAGTTTTACTTGCAGGAGCCAAGAAACAAGGACACCTGCATCACGGTCACCTTCCT TAGCAGCAATGTCACCTCCTCAGTCAAGATCACCATACCTAGGCAGCAACACCAGGGGAA AGGAATCATAGCTCACCCCAGTCCTCAGTGCCAGATAAACCAAGTCAAACTCAAGCTTCA GGCTTCCCACCGGGTTTGGAAAAAAGACCGGACTACTATTATCGGAAAGTTCTGCACTGC TCCTTTGCCTGTCAATGACAATAAAAAGACGGTCTGCTTACCTGAGCCAGTGAACTTACA AGCAAGTGAGACTGTTTCTCATGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 126-258, - strand, RNAz p=0.935146 | |
| 139-258, - strand, RNAz p=0.946286 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 126-258, - strand, RNAz p=0.935146 | |
| 139-258, - strand, RNAz p=0.946286 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 87-258, gnl|bosTau2|chr1 (29814794-29814965) | |
| 87-258, gnl|canFam2|chr33 (26292550-26292687) | |
| 87-258, gnl|danRer3|chr1 (32449525-32449388) | |
| 87-258, gnl|dasNov1|scaffold_1562 (103831-103694) | |
| 87-258, gnl|hg17|chr3 (120819552-120819689) | |
| 87-258, gnl|Hg17|chr3 (120819553-120819724) | |
| 87-258, gnl|loxAfr1|scaffold_40579 (15203-15066) | |
| 87-258, gnl|mm7|chr16 (38114866-38114729) | |
| 87-258, gnl|Mm7|chr16 (38114863-38114692) | |
| 87-258, gnl|monDom2|scaffold_24 (16286120-16286257) | |
| 87-258, gnl|oryCun1|scaffold_173505 (4731-4868) | |
| 87-258, gnl|panTro1|chr2 (122542097-122542234) | |
| 87-258, gnl|rheMac2|chr2 (39654764-39654901) | |
| 87-258, gnl|rn3|chr11 (64184854-64184991) | |
| 87-258, gnl|tetNig1|chr2 (17599143-17599280) | |
| 453-621, gnl|bosTau2|chr1 (29823513-29823681) | |
| 453-621, gnl|canFam2|chr33 (26301309-26301749) | |
| 453-621, gnl|dasNov1|scaffold_1562 (92428-91910) | |
| 453-621, gnl|hg17|chr3 (120830137-120830581) | |
| 453-621, gnl|Hg17|chr3 (120830234-120830402) | |
| 453-621, gnl|loxAfr1|scaffold_104766 (9202-8724) | |
| 453-621, gnl|mm7|chr16 (38104699-38104263) | |
| 453-621, gnl|Mm7|chr16 (38104608-38104440) | |
| 453-621, gnl|oryCun1|scaffold_210826 (98846-98429) | |
| 453-621, gnl|panTro1|chr2 (122552618-122553062) | |
| 453-621, gnl|rheMac2|chr2 (39666009-39666454) | |
| 453-621, gnl|rn3|chr11 (64193662-64194153) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-258, gnl|bosTau2|chr1 (29814794-29814965) | |
| 87-258, gnl|canFam2|chr33 (26292550-26292687) | |
| 87-258, gnl|danRer3|chr1 (32449525-32449388) | |
| 87-258, gnl|dasNov1|scaffold_1562 (103831-103694) | |
| 87-258, gnl|hg17|chr3 (120819552-120819689) | |
| 87-258, gnl|Hg17|chr3 (120819553-120819724) | |
| 87-258, gnl|loxAfr1|scaffold_40579 (15203-15066) | |
| 87-258, gnl|mm7|chr16 (38114866-38114729) | |
| 87-258, gnl|Mm7|chr16 (38114863-38114692) | |
| 87-258, gnl|monDom2|scaffold_24 (16286120-16286257) | |
| 87-258, gnl|oryCun1|scaffold_173505 (4731-4868) | |
| 87-258, gnl|panTro1|chr2 (122542097-122542234) | |
| 87-258, gnl|rheMac2|chr2 (39654764-39654901) | |
| 87-258, gnl|rn3|chr11 (64184854-64184991) | |
| 87-258, gnl|tetNig1|chr2 (17599143-17599280) | |
| 453-621, gnl|bosTau2|chr1 (29823513-29823681) | |
| 453-621, gnl|canFam2|chr33 (26301309-26301749) | |
| 453-621, gnl|dasNov1|scaffold_1562 (92428-91910) | |
| 453-621, gnl|hg17|chr3 (120830137-120830581) | |
| 453-621, gnl|Hg17|chr3 (120830234-120830402) | |
| 453-621, gnl|loxAfr1|scaffold_104766 (9202-8724) | |
| 453-621, gnl|mm7|chr16 (38104699-38104263) | |
| 453-621, gnl|Mm7|chr16 (38104608-38104440) | |
| 453-621, gnl|oryCun1|scaffold_210826 (98846-98429) | |
| 453-621, gnl|panTro1|chr2 (122552618-122553062) | |
| 453-621, gnl|rheMac2|chr2 (39666009-39666454) | |
| 453-621, gnl|rn3|chr11 (64193662-64194153) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| lnt (0.142308) |